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Detailed information on CNT30538622


BLAST search results

BLAST vs Swiss-Prot:
sp|P13851|CB21_SINAL, E-value = 4e-113

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30124683Brassica napusPhyscomitrium patens35.6233.4584.9192forward

Expression of CNT30538622

Peptides detected in this lncRNA

>peptide 1 (33 aa)
WVEQVLCFPQWSFSGDSVTFNSSHEDHLSSPNG*

>peptide 2 (42 aa)
MVTRPVPKTSEAPGESFTAFPVKAGEDRAMVEAAIRNFLDLF*

Sequence

>CNT30538622
CCTGGGTAGAGCAAGTCCTCTGCTTCCCCCAATGGTCCTTCTCCGGCGACTCTGTAACCTTCAACAGCTCCCATGAGGATCACCTGAGTAGCCCAAATGG
CTAAGATGCTCTGTGCGTGGACCAAGCTCGGGTTTCCCAAGTAGTCGAGCCCTCCTTCGCTGAAGATCTGTGAACCAGCCTTGAACCAAACAGCTTCTCC
GAACTTCACTCCGTTCCTAGCCAAAAGCTCAGGGAAAACGCAGCCTAGGGCTCCAAGCATGGCCCATCTGCAGTGGATAACTTCTAGCTCACGGTAGCTT
GGGGGCTCTCCGGAGAATGGACCCAAGTACTTGACCCTGTCGGATCCGTACCATGGGCTGCCAGATGGACCGGTGGGTTTGACGGTTTTTCTCATGGTGA
CACGGCCGGTTCCAAAGACCTCTGAGGCTCCCGGTGAGAGCTTCACGGCCTTTCCGGTAAAGGCAGGGGAGGACAGAGCCATGGTTGAGGCAGCCATTAG
AAATTTTCTTGATCTTTTTTAGTTTTTGTGTTTTTTTTT