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Detailed information on CNT3053857


BLAST search results

BLAST vs Swiss-Prot:
sp|Q70XX4|RK14_AMBTC, E-value = 2e-64

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30550215Amborella trichopodaIpomoea triloba28.237.7385.88354forward
CNT30198977Amborella trichopodaPisum sativum23.1315.5881.72290forward
CNT30555950Amborella trichopodaOryza glaberrima28.4723.5682.35357forward
CNT30147499Amborella trichopodaMedicago truncatula23.1318.481.72290forward
CNT30310337Amborella trichopodaCamelina sativa25.6819.2786.02322forward
CNT3083474Amborella trichopodaBrassica juncea28.2310.683.62354forward
CNT30688027Amborella trichopodaTriticum urartu23.058.9984.43289forward
CNT30574575Amborella trichopodaVitis vinifera25.6821.188.51322forward
CNT30116873Amborella trichopodaOryza nivara12.5222.5385.35157forward

Expression of CNT3053857

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MSWIFGLETSTSTHLLNPVIIVSFVCLPLSA*

>peptide 2 (37 aa)
MLLACTIYAMHRLNNHFIKLPSSRNKLNSRIYRKAME*

>peptide 3 (42 aa)
TILKLLYGYVSRSIDLDQFRMGDLGHRSILEILGKSLEYLES*

>peptide 4 (63 aa)
MSISVVTSSYDWNTHQFSSLAVVRYIQMGLSLNHFLFVFAKYGGREINIFFPERNKSMIKNPW*

>peptide 5 (53 aa)
MSQFPNDRTKDSSSFWISLLINNNCCIVIISHYYTVVTFEFFTCSYNYSSDHF*

>peptide 6 (46 aa)
YLEIVIWLCQPIHRSGPISDGRSRSPIHFGNIGEVIRVPRELMILS*

Sequence

>CNT3053857
ACTATCTTGAAATTGTTATATGGCTATGTCAGCCGATCCATCGATCTGGACCAATTTCGGATGGGCGATCTAGGTCACCGATCCATTTTGGAAATATTGG
GGAAGTCATTAGAGTACCTCGAGAGCTAATGATACTGTCTTAGTGAAATTCAAATGTCTCAATTCCCCAACGATCGAACCAAAGACTCGAGTTCCTTTTG
GATATCCCTCTTGATCAATAACAACTGCTGCATTGTCATTATATCACATTATTATACCGTTGTCACGTTTGAGTTCTTTACATGTTCGTACAATTACAGC
TCTGATCACTTCTGATCTTTCCAGGGGCATATTGGGTACTGCGTCTTTGATTACAGCAACAATAATGTCACCAATATGAGCATTTCGGTAGTTACTAGCT
CCTACGATTGGAATACACATCAATTCTCGAGCCTCGCTGTTGTCCGCTACATTCAAATGGGTTTGAGCTTGAATCATTTTCTTTTTGTTTTTGCAAAGTA
TGGGGGCAGAGAAATAAATATTTTCTTTCCAGAAAGAAATAAATCAATGATAAAAAATCCATGGTAAATCATACCGGTTCTGTTGACTCCTAATCTGGAT
CAAGCGATTTCGATCTCGATCAACATTTTTTAAAAGCTTGAGTAAAACATAATATGCTCCTTGCCTGCACAATCTATGCAATGCACAGATTGAACAACCA
CTTCATCAAGTTGCCATCTTCAAGAAATAAGTTGAACTCCCGCATATATAGAAAGGCAATGGAATGATTACAAGAAAAACATTGGGTCTTTACTAGGGCA
AATTGGAACGGTATAATCCTCTCCCATTTTGGAAACTCAGGGATATCATAGAAAGCTGAGCTCTCCATTTGCTGCCTAAAACAATTAGACAATGTATATT
ACCTTATAACTTATTAGCTCATCAACGCATATAATGTCCTGGATATTCGGATTAGAGACTAGCACATCTACACACTTGTTAAATCCAGTCATAATTGTGT
CATTTGTGTGTTTACCCCTATCAGCATAAAAAAAGCGGGGTTCAAATAATAACCAGTTGTATGCGATGGCCGATGTAGCTGCCTTTCCCATTTCTCATTA
ATAATCTTCCAAACAGGCTCATAGCGGTTCACATCATCATTTAAATTATGGGCTATCTCCCTCTTGCATCTTTCCATTGCCTCATATATGTAGCCCATGA
AGGGCTTGCACTATCAACCATGTAAAGGACTTTGACAAGAGGAAAATAATATCT