Detailed information on CNT30538358


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30547549Brassica napusIpomoea triloba22.738.486.1565reverse complement
CNT30698329Brassica napusQuercus lobata21.6813.1490.3262reverse complement
CNT30274756Brassica napusChenopodium quinoa21.685.7587.162reverse complement
CNT3069241Brassica napusQuercus suber21.6814.0991.9462reverse complement
CNT30631185Brassica napusVigna unguiculata26.926.6488.3177reverse complement
CNT3084175Brassica napusVigna radiata21.685.9587.162reverse complement
CNT30508643Brassica napusSolanum lycopersicum25.529.4984.9373reverse complement
CNT30255419Brassica napusAvena sativa22.0311.8288.8963reverse complement
CNT30259840Brassica napusBrassica rapa21.6821.4587.162reverse complement
CNT30465278Brassica napusSaccharum spontaneum20.2828.2987.9358forward
CNT30141675Brassica napusLolium perenne21.686.9488.7162reverse complement
CNT30206821Brassica napusHelianthus annuus25.5212.2187.6773forward
CNT30358858Brassica napusLactuca sativa20.9810.3886.6760reverse complement

Expression of CNT30538358

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MARTKQTARKSTGGKAPRKQLATKVWTLSLSLSLSL

Sequence

>CNT30538358
ACACGAGAAACACACCGATGAGCGATAACAACCGTAGGATCGTCAACTTGCTTTTGACATCGTTGCCTATAAATTAAATATCAACAGCCCTACACGTGAG
ATTACTTTCATTATCTTCCCTTTTCGAGATCGGAGCACTAATTTGAATTCAGAGAAGCGAAAGCGACGCAGAGAAGATGGCTCGTACCAAGCAGACCGCT
CGTAAGTCTACCGGAGGAAAGGCCCCGAGGAAGCAGCTTGCTACTAAGGTATGGACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC