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Detailed information on CNT30538312


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7W1|CB4C_ARATH, E-value = 5e-91

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30310638Brassica napusCamelina sativa80.3696.283.46405forward
CNT3081185Brassica napusBrassica juncea61.3165.4796.12309forward

Expression of CNT30538312

Peptides detected in this lncRNA

>peptide 1 (80 aa)
ARRECLISASFKNTKHGPPSVDQLAFSETFDPEHFSVWLKRCRVDLLRVLPDPKELTRHVLREVLVKPVEIVLKILSRFT*

Sequence

>CNT30538312
GGCGAGACGAGAGTGTTTGATCTCAGCCAGCTTCAAGAACACCAAGCATGGCCCACCTTCCGTGGATCAGCTCGCATTCTCTGAAACGTTCGATCCCGAA
CACTTCAGTGTATGGCTGAAACGGTGTCGGGTTGATCTCCTTCGAGTCCTGCCTGACCCCAAGGAGCTCACCCGCCACGTTCTTCGCGAGGTTCTGGTCA
AGCCCGTCGAAATCGTACTGAAGATACTCAGCCGGTTTACCTAAACCGAAGGGGTCGAATCCACGGTCTCCAATCATCGAACCGTCTAGCCATTCCGGCG
GGTTTGCGCCGGGGAACCAAACAAGCCGGTCTCCATCGTTTTGGACCTGCTTCGTTTTCTTCGGCGGTGGAGCTGGTTTCTTTTTCCCGAAGCTGAAATT
GAACTTGGCTTGGACTCTACCGGCTCCGGAACTTGGATCTTGGATCCGGATCCCAAAGATACCAGAGGCTGCAGCTGCAGTGGTGGTAGCCATTTTGAAT
TGTT