Detailed information on CNT30538256


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3074464Brassica napusBrassica juncea93.793.48100387forward
CNT30260341Brassica napusBrassica rapa95.6499.2599.49395forward
CNT30611888Brassica napusArabis alpina24.9421.1198.06103forward
CNT30626608Brassica napusDaucus carota21.0710.2490.887forward
CNT30429165Brassica napusPapaver somniferum20.3423.6692.8684forward

Expression of CNT30538256

Peptides detected in this lncRNA

>peptide 1 (59 aa)
DHQNLSSYSAAFLICLDLKPHPEEGKGESSEATSMRAKWKKKRMRRLKRKRRKMRQRSK*

>peptide 2 (42 aa)
MFLLDQAMISIRILMFITWKNPRLGSRFILFIFYSLLIIVVR*

Sequence

>CNT30538256
CTGACCATCAAAATCTATCTAGCTACTCCGCCGCTTTTCTCATTTGCTTAGATCTAAAACCCCATCCAGAGGAGGGAAAGGGTGAATCTTCTGAGGCAAC
CAGCATGAGGGCTAAGTGGAAGAAGAAGCGTATGAGGAGGTTGAAGAGGAAGAGACGAAAGATGAGACAGCGATCTAAGTAGTTTCGTAACCTGTTTTTG
TCTCTTTACCGACATTTGTGAGAGTTTTGTTGGTTTTCTGTCTACATTTTAATGTTTTTGTTGGACCAAGCTATGATTTCAATCAGAATACTTATGTTTA
TTACATGGAAGAATCCACGACTTGGTTCTCGATTTATCCTCTTTATTTTCTACAGTCTGCTTATAATCGTGGTTAGATGAATGATGATGATCTTATACTT
GCTGTCTGCGTGC