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Detailed information on CNT30538116


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673952Brassica napusSetaria viridis25.3346.7395.44307forward
CNT30513357Brassica napusJuglans regia16.0929.4198.97195reverse complement
CNT30525798Brassica napusPhaseolus vulgaris13.6121.3796.36165reverse complement
CNT30177674Brassica napusSecale cereale83.8350.0596.161016reverse complement
CNT30285397Brassica napusTriticum aestivum83.8376.3395.471016reverse complement
CNT30220717Brassica napusHordeum vulgare26.2490.0895.91318reverse complement
CNT30384202Brassica napusTriticum turgidum83.9161.4196.261017reverse complement
CNT30555411Brassica napusOryza glaberrima13.0439.2196.2158reverse complement
CNT30658798Brassica napusTriticum dicoccoides16.1764.0596.43196reverse complement
CNT30460491Brassica napusSaccharum spontaneum14.1184.6596.49171forward
CNT3017045Brassica napusZea mays46.720.9996.64566reverse complement
CNT3067405Brassica napusLeersia perrieri23.3568.3692.58283forward
CNT30647597Brassica napusRosa chinensis22.2852.9494.81270forward
CNT30203328Brassica napusHelianthus annuus49.572.998.33600forward
CNT30684661Brassica napusTriticum urartu27.897.9997.04338forward
CNT30347224Brassica napusEragrostis tef13.766.491.57166forward
CNT30596724Brassica napusOryza meridionalis20.1310.0995.49244reverse complement
CNT30371505Brassica napusOryza glumipatula16.1779.3595.41196forward
CNT30418160Brassica napusPapaver somniferum28.9639.6698.58351reverse complement
CNT30319422Brassica napusAsparagus officinalis26.9839.9399.08327forward
CNT30149641Brassica napusBrachypodium distachyon41.6725.0595.64505forward
CNT30102660Brassica napusOryza rufipogon13.0442.2595.57158forward
CNT30576588Brassica napusOryza barthii10.7329.6193.85130reverse complement
CNT30495774Brassica napusDigitaria exilis9.8230.0591.6119reverse complement
CNT30604605Brassica napusOryza punctata15.0278.7994.51182reverse complement
CNT30603109Brassica napusGaldieria sulphuraria11.5553.6482.86140reverse complement

Expression of CNT30538116

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MISSWSERMISHTGTETRPRLLREAAVGNFPQWAKA*

>peptide 2 (36 aa)
MKLKGIDGGPHKRWSMWFNSMQSEEPYQGLTCRESS*

>peptide 3 (37 aa)
MGESLTEQCRVEVEGLRVLNFFSQRRSNDGIWGISIG*

>peptide 4 (37 aa)
MQALSGMIGRKASVGGVLSPPSNPRAQPWTGGGNYQA*

>peptide 5 (42 aa)
MPRILLKERGAFGNADTGGAWLSSARAVRCWVKSRNERNPRV*

>peptide 6 (31 aa)
RVRSWLRMNAGGMLNTCKSDGKWCFQWRTGE*

>peptide 7 (30 aa)
MTSSHHAPYALGDTRATMAGTKGRDPARVS*

Sequence

>CNT30538116
AGAGTTCGATCCTGGCTCAGGATGAACGCTGGCGGCATGCTTAACACATGCAAGTCGGACGGGAAGTGGTGTTTCCAGTGGCGGACGGGTGAGTAACGCG
TAAGAACCTGCCCTTGGGAGGGGAACAACAGCTGGAAACGGCTGCTAATACCCCGTAGGCTGAGGAGCAAAAGGAGGAATCCGCCCGAGGAGGGGCAATA
GCTTACCAAGGCGATGATCAGTAGCTGGTCCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAAT
TTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGAAGGCCTACGGGTCCTGAACTTCTTTTCCCAGAGAAGAAGCAATGACGGTAT
CTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGG
CGTTTTAAGTCCGCCGTCAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTTGAGTACGGTAGGGGCAGAGGGAATTTCCGGTGGAG
CGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGAT
TAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGACCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGG
GAGTACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAG
GGCTTGACATGCCGCGAATCCTCTTGAAAGAGAGGGGTGCCTTCGGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCGTAAGGTGTTG
GGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGCCACCGTTGAGTTTGGAACCCTGAACAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGA
TGACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGACAAAGGGTCGCGATCCCGCGAGGGTGAGCTAACTCCAAAA
ACCCGTCCTCAG