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Detailed information on CNT30538027


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH05|UBI2P_PETCR, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641270Brassica napusNymphaea colorata60.2357.1983.191142forward
CNT30528977Brassica napusEucalyptus grandis46.4765.7584.45881forward
CNT30701438Brassica napusQuercus lobata65.9385.6880.81250forward
CNT30378432Brassica napusArabidopsis thaliana27.4867.1488.87521forward
CNT30279009Brassica napusChenopodium quinoa70.2587.1782.211332forward
CNT30728102Brassica napusCorchorus capsularis47.6859.9982.41904forward
CNT30525141Brassica napusPhaseolus vulgaris72.279.0980.281369forward
CNT3044330Brassica napusPrunus dulcis44.268.5284.73838forward
CNT30169882Brassica napusPistacia vera60.0755.2181.471139forward
CNT30636316Brassica napusCapsicum annuum60.655.4382.851149forward
CNT3097291Brassica napusSolanum tuberosum72.288.980.861369forward
CNT30568725Brassica napusActinidia chinensis59.4497.1681.631127forward
CNT3086353Brassica napusVigna radiata60.1853.2481.161141forward
CNT30238962Brassica napusBrassica oleracea54.0152.9789.261024forward
CNT30511508Brassica napusSolanum lycopersicum47.168.2782.53893forward
CNT30171101Brassica napusTrifolium pratense48.0554.7882.33911forward
CNT30145248Brassica napusMedicago truncatula70.6868.2681.941340forward
CNT30311152Brassica napusCamelina sativa72.9485.7485.471383forward
CNT3061706Brassica napusArabidopsis lyrata34.9772.3888.39663forward
CNT3079055Brassica napusBrassica juncea56.2898.5290.631067forward
CNT30460578Brassica napusSaccharum spontaneum58.8155.7282.61115forward
CNT30605652Brassica napusGossypium raimondii46.8490.0682.55888forward
CNT30229013Brassica napusAnanas comosus60.1872.3582.211141forward
CNT30217449Brassica napusKalanchoe fedtschenkoi60.5576.0881.881148forward
CNT3066849Brassica napusLeersia perrieri58.8183.4680.991115forward
CNT30652253Brassica napusRosa chinensis46.6268.184.05884forward
CNT30128346Brassica napusCorymbia citriodora36.0273.5284.92683forward
CNT30623991Brassica napusDaucus carota72.3662.3981.781372forward
CNT30685626Brassica napusTriticum urartu72.5753.7782.991376forward
CNT30338865Brassica napusEragrostis tef56.1285.8882.051064forward
CNT30480747Brassica napusArabidopsis halleri46.3175.6985.88878forward
CNT30410857Brassica napusPapaver somniferum47.7369.383.2905forward
CNT30704854Brassica napusPrunus avium70.4674.9384.511336forward
CNT3032754Brassica napusTheobroma cacao60.2387.0481.171142forward
CNT3026527Brassica napusPopulus trichocarpa45.6888.6483.26866forward
CNT30321313Brassica napusAsparagus officinalis57.0782.5382.811082forward
CNT30120672Brassica napusCitrus clementina71.3174.1680.621352forward
CNT30595410Brassica napusEragrostis curvula57.8680.4383.231097forward
CNT30111644Brassica napusFicus carica64.9886.4681.741232forward
CNT30334105Brassica napusCynara cardunculus72.2658.180.731370forward
CNT3050995Brassica napusCucumis sativus56.5996.4182.761073forward

Expression of CNT30538027

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MVSELSTSRVMVLPVSVFTKICICKQENKYSTLSQDYNPKSN*

>peptide 2 (30 aa)
MVLPVRVLTKICIPPLRRSTRWSVDSFWML*

>peptide 3 (94 aa)
MERGLFLDVVISECASILQLLPCEDESLLVWWDAFLVLNLCFDIVDCVRALNLQGNCFAGEGLDKDLHTTTKTQHKVESRLLLDVVVSESTAIL*

>peptide 4 (71 aa)
MERGLLLDVVIRESATILQLLPCEDESLLVWRDPFLVLNLRLDIIDRVRALNLQCDGFAGEGLDKNLHTTS*

>peptide 5 (62 aa)
FVWSLKSKGQPLIKGFSLLFLPRFPPPSPKGCLKGPPIQMPLRAQPKGSQRKENKEDRKRKT*

>peptide 6 (61 aa)
MSLCWSGGIPSLSCILAFTLSIVSELSTSRVMVFPVRVLTKICIPPLRRSTRWSVDSFWML*

>peptide 7 (48 aa)
MQSRLLLNVVICKRATILKLFTSEDESLLVRRNPFLVLNLSLHIVDCV*

>peptide 8 (30 aa)
MVLPVRVLTKICIPPLRRSTKWSVDSFWML*

Sequence

>CNT30538027
TTTTGTTTGGTCATTAAAGAGTAAGGGACAGCCCTTAATTAAGGGCTTTTCCCTTCTCTTTCTTCCTCGGTTCCCACCCCCTTCCCCTAAGGGATGCCTT
AAGGGACCCCCAATACAGATGCCCTTACGAGCCCAACCGAAAGGTTCACAACGAAAAGAAAATAAAGAAGACAGAAAAAGAAAAACATAGACACAGACAA
TCCATTTTTGCAGAAGCAAACAGAGATCACCTCCCAAGTGCATTAACAAAGCTCACAGAACACCACTTTTTGACCACAGAGATCAACGAGCTCAGAAGCT
TCCACCACGAAGACGCAGAACCAAATGCAGAGTCGACTCCTTCTGAATGTTGTAATCTGCAAGCGTGCGACCATCCTCAAGCTGTTTACCAGCGAAGATG
AGTCTCTGTTGGTCCGGAGGAATCCCTTCCTTGTCCTGAATCTTAGCCTTCACATTGTCGATTGTGTCTGAGCTTTCAACTTCCAAGGTAATAGTCTTGC
CTGTCAAAGTCTTGACAAATATTTGCATTCCACCACGGAGACGCAACACAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAATCCGCAAGCGTACGACC
ATCCTCAAGCTGTTTCCCAGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGTATCTTGGCCTTCACGTTGTCAATCGTGTCAGAG
CTCTCCACCTCAAGAGTAATGGTTTTTCCTGTGAGGGTCTTGACGAAAATCTGCATACCACCTCTCAGACGAAGCACAAGATGGAGCGTGGACTCCTTTT
GGATGTTGTAATCCGCGAGAGTGCGACCATCCTCCAGCTGCTTCCCTGCGAAGATGAGTCTCTGCTGGTCTGGAGGGATCCCTTCCTTGTCCTGAATCTT
CGCCTTGACATTATCGATCGTGTCAGAGCTCTCAACCTCCAGTGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAAATCTGCATACCACCTCTTAGACGA
AGCACAAGATGGAGCGTAGACTCCTTTTGGATGTTGTAGTCAGCGAGTGTGCGTCCGTCTTCTAGCTGCTTCCCGGCAAAGATAAGTCTCTGCTGGTCTG
GAGGGATCCCTTCCTTGTCCTGAATCTTCGCCTTGACATTATCGATCGTGTCAGAGCTCTCAACCTCCAGTGTGATGGTTTTGCCGGTGAGGGTCTTGAC
AAAAATCTGCATACCACCTCTCAGACGAAGCACCAAATGGAGCGTGGACTCTTTCTGGATGTTGTAATCAGCGAGTGTGCGTCCATCCTCCAGCTGCTTC
CCTGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATGCCTTCCTTGTCCTGAATCTTTGCTTTGACATTGTCGATTGTGTCAGAGCTCTCAACCTCCAAGG
TAATTGTTTTGCCGGTGAGGGTCTTGACAAAGATCTGCATACCACCACGAAGACGCAGCACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGC
GAGAGTACGGCCATCCTCTAGCTGTTTACCGGCAAAGATAAGCCTCTGCTGATCCGGAGGAATACCTTCCTTGTCCTGGATCTTAGCCTTGACGTTATCG
ATGGTGTCAGAGCTCTCGACCTCGAGAGTAATGGTCTTGCCGGTGAGCGTTTTCACGAAAATTTGCATCTGCAAACAAGAAAACAAGTATTCAACACTCA
GCCAAGATTATAATCCTAAATCGAATTAGATCATGCAATTCACAGAAGAAACTACAGATTGAGATCTTAATCATCATCGTTCATATAACAATAAGCTAGA
TCGACGACACCAACAAAGAATTTTACAAATCGATTAACCAAGGATTCAATAATCTTAAGCAACACATGATACGAGACGAACGATCATAAACAAAAG