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Detailed information on CNT30536141


BLAST search results

BLAST vs Swiss-Prot:
sp|P51414|RL261_ARATH, E-value = 2e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690207Eucalyptus grandisOryza sativa54.5562.4681.31198forward
CNT30522907Eucalyptus grandisSetaria italica32.7821.0685.71119forward
CNT3044269Eucalyptus grandisPrunus dulcis51.7931.4981.91188forward
CNT30181670Eucalyptus grandisSecale cereale20.6626.2289.3375forward
CNT3082886Eucalyptus grandisBrassica juncea27.2738.5285.8699forward
CNT30230974Eucalyptus grandisAnanas comosus44.082589.38160forward
CNT30714885Eucalyptus grandisMalus domestica golden52.6239.2286.39191forward
CNT30720826Eucalyptus grandisTriticum spelta41.052582.55149forward
CNT30597158Eucalyptus grandisOryza meridionalis54.5528.8682.32198forward
CNT30355705Eucalyptus grandisLactuca sativa33.0632.8882.5120forward
CNT30371509Eucalyptus grandisOryza glumipatula54.5534.281.82198forward
CNT30105031Eucalyptus grandisOryza longistaminata60.3328.482.19219forward
CNT30149302Eucalyptus grandisBrachypodium distachyon54.5533.1181.31198forward
CNT30115704Eucalyptus grandisOryza nivara23.9725.7482.7687forward

Expression of CNT30536141

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MDPHVHGRPIDLLASDALDVDDPLLAVDLDDLPLAALVSAADHLDLVVLAHRHRPHA

>peptide 2 (90 aa)
SCSASLGLAIEQGLAVLVEPQLRDNNLRRMNPHVHAAARPWALRSSRDLRSLSSRSFVIKTFEGWIPTFTVDPLTFSRVMRSMWMTHFLR*

>peptide 3 (29 aa)
AAARPWALRSSRDLRSLSSRSFVTTTFEG*

Sequence

>CNT30536141
CAGCTGCAGCGCGTCCCTGGGCCTTGCGATCGAGCAGGGACTTGCGGTCCTTGTCGAGCCGCAGCTTCGTGACAACAACCTTCGAAGGATGAATCCCCAC
GTTCACGCGGCAGCGCGTCCCTGGGCCTTGCGATCGAGCAGGGACTTGCGGTCCTTGTCGAGCCGGAGCTTCGTGATCAAGACCTTCGAGGGATGGATCC
CCACGTTCACGGTCGACCCATTGACCTTCTCGCGAGTGATGCGCTCGATGTGGATGACCCACTTCTTGCGGTAGACCTGGACGACCTTCCCCTCGCGGCC
CTTGTAAGTGCCGCGGACCACCTGGACCTCGTCGTCCTTGCGCACCGGCATCGACCGCACGCT