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Detailed information on CNT30535090


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549732Eucalyptus grandisIpomoea triloba20.8653.6286.5200forward
CNT30403246Eucalyptus grandisBeta vulgaris19.645.0887.77188reverse complement
CNT3084074Eucalyptus grandisVigna radiata18.0463.8484.97173forward
CNT3057361Eucalyptus grandisAmborella trichopoda22.424.2784.65215reverse complement

Expression of CNT30535090

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MEMPMLYSSEGGRKDKTKKKKKLIIFYFNKNSSLKLMELTSFAFG*

>peptide 2 (38 aa)
MLLASCTVYILRRKHRKDQLVRFWADTIRTTYLCHDRR*

>peptide 3 (31 aa)
MYKIKIPMAFATITFPTTICLFFFYSHFTSK*

Sequence

>CNT30535090
GTTGAATAATTGTTCGAGTAAGTCTTGAACGAGCCCCCCGAAATCTTGATACAAATAAACGAATTTTTTTTTCTATGTCTCCGAGCTATATATCCTCATC
TAATTCTAGTCATTGAATAAATGATACTTTCATGAATAACTAATCGATTTCCTTTCTTTCAGTTATTCTTTTCCCTTTTCCTAGTTTATTAATAACAAAA
TGGATTCTTCCAATGTATAAAATAAAAATTCCAATGGCTTTTGCTACTATAACCTTCCCGACCACGATTTGTCTTTTCTTTTTTTATAGTCATTTCACCT
CAAAATGAGTATTGATACTAGGTATCAAAAAACAGAAAAAAGTAATAAATAGAAATGAATAACGAAATAGTGGATTCCATCATTTCTATGGTTATGTCTT
AAACGGTGAGGTCCTCTATATATACCGAAGTCCCTTACTTCATTTAATCAATGCTATTAGCAAGTTGTACAGTTTACATTCTTCGGAGAAAGCACCGTAA
AGATCAATTAGTGAGGTTTTGGGCCGATACAATAAGAACTACTTACTTATGTCATGATAGAAGATAAAAGTTAGGAATCCATTTATGTAATAAAGTCGAT
CCCCTAAGGTATTGAGCAGCGGTGTAGCATCAGATCCCAAAGGTAGTAAGTCTTTTCTTTATTACGAAGAAAAGACTTTTTCGAAGATTCTATATCAATT
TCTCTATGAAACCGAGATACTTACATTTGAGAAAATTCTAGCAATAATGGAAATGCCTATGCTTTATTCTTCTGAAGGTGGGAGAAAAGATAAAACTAAA
AAAAAAAAAAAACTGATTATTTTTTATTTTAATAAAAATTCAAGTTTGAAACTCATGGAATTGACCTCTTTTGCTTTTGGTTAACCTGAGAAAAAAAAAT
GGGACACCACAAGAATTGAACGATGAGCCTTATGAGGTAGGAAACTCTCAAGTACGGTT