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Detailed information on CNT30534838


BLAST search results

BLAST vs Swiss-Prot:
sp|P51845|PDC1_TOBAC, E-value = 5e-77

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378612Eucalyptus grandisArabidopsis thaliana14.5824.8484.4277forward
CNT30157163Eucalyptus grandisPistacia vera50.5760.8279.78267forward
CNT30562763Eucalyptus grandisActinidia chinensis39.7745.7580.95210forward
CNT30238282Eucalyptus grandisBrassica oleracea43.5642.8379.13230forward
CNT30146477Eucalyptus grandisMedicago truncatula25.197.6284.96133forward
CNT30265141Eucalyptus grandisBrassica rapa30.4938.880.12161forward
CNT30128751Eucalyptus grandisCorymbia citriodora25.9526.9290.51137forward
CNT30154533Eucalyptus grandisPrunus persica27.0832.5783.92143forward
CNT30706321Eucalyptus grandisPrunus avium34.6633.1581.42183forward
CNT3026328Eucalyptus grandisPopulus trichocarpa26.1426.1484.06138forward
CNT30113754Eucalyptus grandisFicus carica44.3257.2180.77234forward

Expression of CNT30534838

Peptides detected in this lncRNA

>peptide 1 (56 aa)
IENGASKYIGICRFHDLGTECSAHRTPVSPDEAGMVLGHLPFCRWHHSYSIAACIS*

>peptide 2 (54 aa)
MASQLQHSRMHQLVLRRLQKPLQPGVSGHPPLPASLPCSRTLQLPLPQLPIPSD*

Sequence

>CNT30534838
ATTGAAAATGGGGCCAGCAAATATATAGGCATCTGCAGATTCCACGATCTCGGCACAGAATGCAGTGCTCACCGCACCCCAGTAAGTCCCGATGAAGCGG
GGATGGTGCTCGGGCACTTGCCCTTTTGCCGATGGCATCACAGCTACAGCATAGCCGCATGCATCAGCTAGTTCTACGAAGGCTTCAGAAGCCTTTGCAA
CCCGGAGTTTCGGGCCACCCACCATTACCGGCTTCACTGCCTTGTTCAAGAACTCTGCAGCTGCCTCTACCGCAGCTTCCAATCCCATCTGATTAGTCAA
TCTGTGTCGATAAAAAGTAATCAATCACATCACTCTAGTCATAATCTAATGCAGCAAATAGACTTGATCGACTGAACAGATGGAAAATTACTTGGGAGAG
AGTGCAAATGGAACCGGCTCACGACTGAAAGTGGGGTGAGGTATGGCAGGCAAGTTGCAGCTTATGCTTATGTAAACGGGCTTGCTTTCTTTCAGAGCAG
TCGAGATCGCGGTATCAATCTGTTCGTG