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Detailed information on CNT30534348


BLAST search results

BLAST vs Swiss-Prot:
sp|P85955|DRE1_PSEMZ, E-value = 1e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30585986Eucalyptus grandisMusa acuminata14.1522.5387.58153forward
CNT30437038Eucalyptus grandisAegilops tauschii14.5220.4484.08157forward
CNT30474096Eucalyptus grandisSaccharum spontaneum14.1540.1684.97153forward
CNT30572283Eucalyptus grandisVitis vinifera14.9934.3282.1162forward
CNT30101508Eucalyptus grandisOryza rufipogon5.8324.1488.8963forward

Expression of CNT30534348

Peptides detected in this lncRNA

>peptide 1 (39 aa)
NLCFIIIQSSPSINLKKLVKKMRSRKRRNATDYTIHLLA*

>peptide 2 (54 aa)
MRKNSEPKIDNIYSNISSFSSSCCCCSYFTRCPADHQKGRKNSKGKRTKKRVLA*

>peptide 3 (74 aa)
MGSPRPTIPSNAAVAPLLSASGAAPPPAAAAAAAAAAAAAAVSSRAAGPSPPAGSNLASLRAPACKNSPRATRE*

Sequence

>CNT30534348
AATCTGTGCTTTATCATTATCCAAAGCAGCCCCTCCATTAATTTGAAAAAACTCGTGAAGAAAATGCGCAGCCGAAAGAGAAGAAACGCTACAGACTACA
CCATCCATCTTCTCGCATAACAACGACCGACCGAAACCATTTTTTTACAACGAATTGTCGAAGAAGACGAAGAAGAAGAGAAGATCGAACGATGGTGGAC
GACAGATTAGAGAGGAAGATCACAAAGCTCTCTGATGAGGAAAAACTCGGAACCAAAAATAGATAATATTTACAGCAATATCTCTTCTTTTTCTTCTTCC
TGCTGCTGCTGTTCTTACTTCACCCGCTGCCCTGCAGATCACCAAAAAGGAAGGAAGAACTCGAAAGGAAAAAGAACCAAAAAAAGGGTCCTAGCTTGAC
TACATCCAAAACGGCGGCGGCTTGTTCAGATCAATGGGAAGCCCGCGACCCACCATCCCCAGCAACGCCGCGGTCGCCCCGTTGCTGTCGGCCTCCGGAG
CAGCGCCGCCGCCAGCCGCCGCCGCGGCCGCCGCAGCCGCAGCAGCAGCAGCAGCAGTTTCCTCTCGCGCCGCCGGGCCCTCGCCGCCGGCGGGCTCGAA
CCTCGCGTCCCTGAGGGCCCCGGCGTGCAAGAACTCGCCGAGGGCGACCCGGGAGTAGTGGTGCCAGGCGTCGGGGGGAGGGCCGAGGGAGAGGTGGTGG
AGGTGGTGGTGCGGAGGCGGGGGCGGCAAGGCGGGAGGGGGGAAGTTGGTCTTGGCCTTGGAGCCGCGGAGGGAGCGGGCGGCGCCGTCGTAGGCGAGGG
CGGCCTCCTCGGGGGTGTCGAAGGTGCCGAGCCAGACGCGGGTCTTCTTCCAGGGGTCGCGTATCTCCGCCGCGTAGCGGCCCCACGGCCTCTTCCGCAC
TCCCCTGTAGTGGATCTCCCCGCCGCCGCCGCCGCCGCCGCCTCCCGCGGTGGTTGATGACGACGACGACGACGACATTGTCTCCGTGAGCGCGAGCGAG
CGTGTGTGATGAGCAGCTTTGGTGAGTCGCCCCGGAATCGGCGGCCGCTCGCCCAACATTTCGCTTATATACCAACAAAGC