Detailed information on CNT30534258


BLAST search results

BLAST vs Swiss-Prot:
sp|P27493|CB22_TOBAC, E-value = 3e-179

BLAST vs NONCODE:
NONBNAT005173, E-value = 3e-68

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30141287Eucalyptus grandisLolium perenne56.1362.1484.18632forward

Expression of CNT30534258

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MEILPLPRSSGVEGESFTACPARDGEERAMVEAAIVEWI*

>peptide 2 (43 aa)
MACTKNPNMENMASLPFLISFTLSSAKASGSSARPKGSKLPPG*

>peptide 3 (34 aa)
EIGQDQDRLDHRKLWRTRFADKSMKVKWQIMKEN*

>peptide 4 (46 aa)
MPLRARSSGKTHPRAPSMAHLQWMTSSSRFLAKVSGSAESPAVSQP*

>peptide 5 (71 aa)
MGLGTWRGLDHTMGSQRRLACGRPSSWRFSHCREAREWRGRASPPVQPGMERREPWWKPPLLSGFESLTSV*

Sequence

>CNT30534258
GAAATTGGGCAAGATCAAGATCGCTTGGACCATAGAAAGCTTTGGAGGACAAGGTTTGCAGATAAATCTATGAAGGTTAAGTGGCAAATAATGAAGGAAA
ACTAGGGAACAAACGTGGGAGTCGAGTCGAAAAAGGAAGGAAGATGATTGAAGATGTCACTCAAGAGTCAAGCCAGCGGCAATACATGTAATTTACACTT
CTGAAAGTATCGTTTCCAACCGAACTGTATATCACCCCTCACGCTCACTTTCCAGGGACGAAGTTGGTGGCATAGGCCCAAGCATTGTTGTTAACTGGAT
CAGCAAGGTGGTCAGCCAAGTTCTCCAATGGACCCTTTCCTGTCACAATGGCCTGCACGAAGAACCCAAACATGGAGAACATGGCAAGCCTGCCGTTCTT
GATCTCCTTCACCTTGAGCTCGGCAAAGGCCTCAGGGTCATCGGCCAGGCCCAAGGGGTCGAAGCTCCCCCCGGGGTAGAGCGGGTCGGTGACCTCACCG
AGCGGGCCACCAGCAATACGGTAACCCTCGACGGCTCCCATCAGGATGACTTGGCAGGCCCAGATGGCCAAGATGCTTTGGGCGTGGATCAGGTTGGGGT
TGCCCAGGTAGTCGAGCCCTCCCTCGCTAAAGATCTGGGCGCCAGCCTTGAACCACACGGCCTCACCGAACTTGATGCCGTTGCGGGCCAGGAGCTCGGG
GAAGACGCACCCCAGGGCACCGAGCATGGCCCACCTGCAGTGGATGACTTCAAGCTCGCGGTTCTTGGCGAAGGTCTCGGGGTCGGCCGAGAGTCCGGCG
GTGTCCCAGCCATAGTCACCGGGGAACTCGCCAGTGAGGTAGCTCGGGGGCTCGCCGGAGAATGGGCCTAGGTACTTGGCGCGGTCTGGACCATACCATG
GGCTCCCAGAGGAGACTGGCTTGCGGACGGCCTTCCTCATGGAGATTCTCCCATTGCCGAGAAGCTCGGGAGTGGAGGGGGAGAGCTTCACCGCCTGTCC
AGCCAGGGATGGAGAGGAGAGAGCCATGGTGGAAGCCGCCATTGTTGAGTGGATTTGAGAGCTTGACCTCTGTCTAGTGTTGAAATAGAGAGTTGAGATG
GATTGGCGATGGTTGTTGGGACTTGT