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Detailed information on CNT30534250


BLAST search results

BLAST vs Swiss-Prot:
sp|P27493|CB22_TOBAC, E-value = 2e-179

BLAST vs NONCODE:
NONBNAT005173, E-value = 3e-68

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641326Eucalyptus grandisNymphaea colorata51.9750.7685.71567forward
CNT30359492Eucalyptus grandisLactuca sativa53.0767.7282.9579forward

Expression of CNT30534250

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MEILPLPRSSGVEGESFTACPARDGEERAMVEAAIVEWI*

>peptide 2 (43 aa)
MACTKNPNMENMASLPFLISFTLSSAKASGSSARPKGSKLPPG*

>peptide 3 (30 aa)
DQDRLDHRKLWRTRFADKSMKVKWQIMKEN*

>peptide 4 (71 aa)
MGLGTWRGLDHTMGSQRRLACGRPSSWRFSHCREAREWRGRASPPVQPGMERREPWWKPPLLSGFESLTSV*

>peptide 5 (46 aa)
MPLRARSSGKTHPRAPSMAHLQWMTSSSRFLAKVSGSAESPAVSQP*

Sequence

>CNT30534250
AAGATCAAGATCGCTTGGACCATAGAAAGCTTTGGAGGACAAGGTTTGCAGATAAATCTATGAAGGTTAAGTGGCAAATAATGAAGGAAAACTAGGGAAC
AAACGTGGGAGTCGAGTCGAAAAAGGAAGGAAGATGATTGAAGATGTCACTCAAGAGTCAAGCCAGCGGCAATACATGTAATTTACACTTCTGAAAGTAT
CGTTTCCAACCGAACTGTATATCACCCCTCACGCTCACTTTCCAGGGACGAAGTTGGTGGCATAGGCCCAAGCATTGTTGTTAACTGGATCAGCAAGGTG
GTCAGCCAAGTTCTCCAATGGACCCTTTCCTGTCACAATGGCCTGCACGAAGAACCCAAACATGGAGAACATGGCAAGCCTGCCGTTCTTGATCTCCTTC
ACCTTGAGCTCGGCAAAGGCCTCAGGGTCATCGGCCAGGCCCAAGGGGTCGAAGCTCCCCCCGGGGTAGAGCGGGTCGGTGACCTCACCGAGCGGGCCAC
CAGCAATACGGTAACCCTCGACGGCTCCCATCAGGATGACTTGGCAGGCCCAGATGGCCAAGATGCTTTGGGCGTGGATCAGGTTGGGGTTGCCCAGGTA
GTCGAGCCCTCCCTCGCTAAAGATCTGGGCGCCAGCCTTGAACCACACGGCCTCACCGAACTTGATGCCGTTGCGGGCCAGGAGCTCGGGGAAGACGCAC
CCCAGGGCACCGAGCATGGCCCACCTGCAGTGGATGACTTCAAGCTCGCGGTTCTTGGCGAAGGTCTCGGGGTCGGCCGAGAGTCCGGCGGTGTCCCAGC
CGTAGTCACCGGGGAACTCGCCAGTGAGGTAGCTTGGGGGCTCGCCGGAGAATGGGCCTAGGTACTTGGCGCGGTCTGGACCATACCATGGGCTCCCAGA
GGAGACTGGCTTGCGGACGGCCTTCCTCATGGAGATTCTCCCATTGCCGAGAAGCTCGGGAGTGGAGGGGGAGAGCTTCACCGCCTGTCCAGCCAGGGAT
GGAGAGGAGAGAGCCATGGTGGAAGCCGCCATTGTTGAGTGGATTTGAGAGCTTGACCTCTGTCTAGTGTTGAAATAGAGAGTTGAGATGG