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Detailed information on CNT3053422


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9G2I2|PSBN_AMBTC, E-value = 6e-21

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3019629Amborella trichopodaCitrullus lanatus11.8970.5685.17290reverse complement
CNT30730483Amborella trichopodaCorchorus capsularis7.8343.3187.43191reverse complement
CNT30401703Amborella trichopodaBeta vulgaris5.2541.4289.06128reverse complement
CNT30194600Amborella trichopodaPisum sativum9.9731.1184.36243reverse complement
CNT30507056Amborella trichopodaNicotiana attenuata4.5523.9292.79111reverse complement
CNT30177378Amborella trichopodaSecale cereale5.7426.6785.71140reverse complement
CNT30283943Amborella trichopodaTriticum aestivum5.7429.2982.86140reverse complement
CNT30147444Amborella trichopodaMedicago truncatula6.3645.8689.03155forward
CNT30231593Amborella trichopodaAnanas comosus11.2834.988275reverse complement
CNT30357898Amborella trichopodaLactuca sativa26.2932.1182.68641reverse complement
CNT30422352Amborella trichopodaPapaver somniferum11.1632.587.87272reverse complement
CNT30574487Amborella trichopodaVitis vinifera16.6565.884.48406reverse complement

Expression of CNT3053422

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MNIFTQCFRCSSNSMGACCRWLEWRGRGQASQPQ*

>peptide 2 (35 aa)
MEALVYTFLLVSTLGIIFFAIFFQEPPKVPNKKIK*

>peptide 3 (41 aa)
MGMVNGYEPILYMGMVNGNDFNILKSWMPIPHGRGGLPRGA*

>peptide 4 (34 aa)
MSMSLDTLTEHPSSTYIHVLWEMWSAFKAAPIFF*

>peptide 5 (35 aa)
MYCGRCGPLLRLLLFFFSRHSYSTPSRIHGDGEWV*

>peptide 6 (51 aa)
MGNYTLMGVAMALFAIFLSIILEIYNSSVLLDGISVSKVQKNQVKTKNKNK*

>peptide 7 (59 aa)
MRLDSSKSIPTATKFPLHRSCLIRIDSSMGQLSCNVYPTTCRIWKEVFCGEIHLLLRDP*

>peptide 8 (41 aa)
MEAIYNFIVNHDRIYGSTGLYIPVGIDSRDNFFRYLFSRTA*

>peptide 9 (50 aa)
IRISYKVIECHGARTLFRDVFAGIDLDLDAQVEFGAFQKIGDPTTRRQIV*

>peptide 10 (67 aa)
MGPPKQQHVGLCVKMLVKWRIFITYALNRLWMLAHVPSSLHIRLYAPIGDRYLNRSNNMRILNRKTM*

>peptide 11 (65 aa)
MYIQPLVEFGKKCFVERYISCYGIHRRTKNEHFHPMFSMFFKFNGSLLSMVGMAWEGSGQPTTIK*

Sequence

>CNT3053422
GTATTAGAATCTCATATAAGGTTATAGAATGTCATGGTGCTAGAACCTTGTTTAGAGATGTTTTTGCTGGTATCGACCTGGATTTGGATGCCCAAGTAGA
ATTTGGAGCATTCCAAAAAATAGGAGATCCAACTACAAGGAGACAAATAGTTTGATACAACATTGCTCTAGTCTGTCTCGCCTCTATTTGGTTTGGTATA
TTTCGTATAGAGTACAGGAAATCTAAAATATTGATTCAAGTTACTCTTTCTCTAGGAAATGATCCCAAATGAATAGATATGGAAGCTATATATAATTTCA
TTGTAAACCACGATCGAATCTATGGAAGCACTGGTTTATACATTCCTGTTGGTATCGACTCTAGGGATAATTTTTTTCGCTATCTTTTTTCAAGAACCGC
CTAAGGTTCCGAATAAAAAAATAAAATGATTTTTCATTATCTCAATTGAAATAATGAACCTCCTGGGAGGTTCATTATTTCAATTAGTTCCCATGTTCCT
CGAATGGATCTCTTAGTTGTTGAGAGGGTTGCCCAAAGGCGGTATATAAGGCATACCCAGTAAAGCTTACAAGTGAACCAGATATGGAGATGGCAACTAG
GGTTGCAGTTTCCATTATTAGAGAATTTCAATACCACGACAGGATAAGATAGTTTATTTATAACGGAATAATATACAAAGTCAATAGATCTCAACCAATG
CAATAGAATTTATGGTTACACAAAGCGTGGAGGATAGTTCCTGATCTGGTCCAAGACGGACTATTGTATAGGATTTATTTAAACCGTTGAATTTAGAATA
TGGTAAAGTAGCTCCGGGATGGGGAACTACACCCTTATGGGGGTCGCAATGGCTTTATTTGCAATATTTCTATCAATTATTTTGGAGATTTATAATTCTT
CTGTTTTACTGGATGGAATCTCAGTGAGTAAGGTACAGAAAAACCAGGTAAAAACAAAAAATAAAAATAAATGAATCACTTAGGACTTGGATTTCTAGGT
TAGGTAATTCGACCGTGCAATTCCTTTGTTTCGGTATTTCTGGAATATGAGTGTGTGACTTGTTATAATTGATCCTATTGTATACTACAAAGAGTGGATC
TGTCGTCTTGATAGAGATGGCTCTATCTTGTCGGATATTCAGTCTAGTATCTGAAACATATACATTACATGGTGACCTAGACAAACTATTTGATAGGTAG
AAACTTAAATAACAAAATGACCTTATCTTTATAAAGTTACCAAGACAGAATCAACTATGTAAATGTTGCATAGAAACACAATGCGTATAATTGTAGATTC
TCATGTACTTTTAGAAGGGATGGTAGGATAGAAATGGGTCCACCCAAACAACAACATGTTGGCCTGTGTGTCAAAATGCTTGTAAAATGGCGCATATTCA
TCACCTATGCACTAAATAGACTATGGATGCTAGCCCATGTACCTTCTAGCTTACACATCAGGCTATATGCTCCCATAGGAGATAGATACTTAAACAGAAG
TAATAATATGAGGATTTTAAACAGAAAAACCATGTGAGTTACTTTTTCTGAGAGATAGGATATCTAGGTTTTAAGATTGGGAAAACATTGTATACCTAGT
ATGAGCATGTCATTGGATACTTTGACTGAACATCCATCATCCACATATATCCATGTACTGTGGGAGATGTGGTCCGCTTTTAAGGCTGCTCCTATTTTTT
TTTAGCAGGCACAGTTACTCAACTCCATCAAGGATACATGGGGATGGTGAATGGGTATGAACCCATACTATACATGGGGATGGTGAATGGGAATGATTTT
AATATTTTAAAATCATGGATGCCTATTCCACATGGCAGAGGGGGGCTGCCACGAGGGGCATAGACGATTTTTCCATGCTACGAAATATAAACAATTAGGT
TGAAGCCCAAGGTTCAAATTCGTGACTTGTTAAAGATCTCACAATCTATTTCGCTGTGAAAACAATCATATCTTCCAGTCTATCCAATGAAATCGTCAAT
ATTTAACTTGCCATAGGCACTACTAGCAATTCCAGAATTGTAATTTTAGCCATGAGACTAGATTCGTCAAAATCCATACCAACTGCTACAAAATTCCCAT
TGCATAGATCGTGCCTTATAAGGATCGACAGTTCCATGGGACAATTGTCCTGTAATGTATATCCAACCACTTGTAGAATTTGGAAAGAAGTGTTTTGTGG
AGAGATACATCTCTTGTTACGGGATCCATAGAAGAACAAAGAATGAACATTTTCACCCAATGTTTTCGATGTTCTTCAAATTCAATGGGAGCTTGCTGTC
GATGGTTGGAATGGCGTGGGAGGGGTCAGGCCAGCCAACCACAATAAAATAACAACTGAAACTGATAGAAATTTATGGATGTCAGATAAGAGCAACTTTG
CTACGATGGCACTGTCACAATATAGGGCTTAGTCAAGG