Detailed information on CNT30534100


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39654|PSAL_CUCSA, E-value = 5e-86

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672633Eucalyptus grandisSetaria viridis17.5339.8883.59128forward
CNT3042792Eucalyptus grandisPrunus dulcis14.9329.5485.32109forward
CNT30222283Eucalyptus grandisHordeum vulgare17.8130.9584.62130forward
CNT30437582Eucalyptus grandisAegilops tauschii14.2531.5282.69104forward
CNT30154501Eucalyptus grandisPrunus persica17.6741.3586.05129forward

Expression of CNT30534100

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MLRITTRPPAANDPAAPAYSVFLKGPALTKGPTKRNPWARPTSTPRRSGFTAVL*

>peptide 2 (37 aa)
MRRSHTLSSRCSGSQPGLRRPMILLLLHTPCSSKGRP*

>peptide 3 (53 aa)
MNLLHKVRKVEHIEEKVGPCDPGDPAEEEPAGELGPSICGLQLIRLLLPPGQG*

>peptide 4 (31 aa)
PFLPKRFRYTDMTLQLHLSLLYEFTSQSKEG*

Sequence

>CNT30534100
CCATTCCTTCCCAAACGGTTCAGATATACAGACATGACTCTTCAACTTCATCTCTCTCTTCTGTATGAATTTACTTCACAAAGTAAGGAAGGTTGAGCAC
ATAGAGGAGAAAGTAGGCCCATGTGACCCCGGAGATCCCGCCGAAGAAGAACCCGCCGGTGAACTTGGCCCATCCATTTGCGGTCTGCAACTGATCAGGC
TCCTTCTTCCTCCCGGTCAAGGTTAGCGACGGTGCTGTCGAGGGCTCTCCTTCATTGAATGAGGCGATCCCATACATTGTCAAGCAGATGCTCAGGATCA
CAACCAGGCCTCCGGCGGCCAATGATCCTGCTGCTCCTGCATACTCCGTGTTCCTCAAAGGGCCGGCCTTGACGAAAGGGCCCACCAAGAGGAATCCGTG
GGCGAGGCCCACCTCGACGCCTCGGAGGAGCGGGTTCACGGCAGTCCTGTAGGCGGGGAGGAGCGGGTTCACGGCAGTCCTGTAGGCGGGGAGGTTGGAG
AGGTACCATGCAATGAGCGGGCTGGATGTGACCGGAGTCTCGAGGCTTCCAATGAAAGGGTCACCATTGAGGGGTTGAACCACTTGGAAGGTTGGCTGCA
TGCGAAGGTAGATGCAGGAATTGAAACCCATCAACTAATGTAACGAGTGAATGGAGCCACTCAGAGAATATGTATTCACAAATGAATGATAACATGCTAT
AATCTCTAAGGTTTTTTTTTTTTTTCTAAT