Detailed information on CNT30534084


BLAST search results

BLAST vs Swiss-Prot:
sp|Q42662|METE_PLESU, E-value = 1e-40

BLAST vs NONCODE:
NONVVIT002763, E-value = 8e-68

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30375849Eucalyptus grandisArabidopsis thaliana92.6516.8886.77189forward
CNT30403132Eucalyptus grandisBeta vulgaris96.0861.0689.8196forward
CNT30194314Eucalyptus grandisSecale cereale30.8825.9387.363reverse complement
CNT30137932Eucalyptus grandisLolium perenne90.6973.4183.78185forward
CNT30650401Eucalyptus grandisRosa chinensis86.2719.9892.05176forward
CNT30717191Eucalyptus grandisMalus domestica golden23.5323.8891.6748forward
CNT30721902Eucalyptus grandisTriticum spelta57.8458.1388.98118forward
CNT30361575Eucalyptus grandisSorghum bicolor67.1621.4483.21137forward
CNT30604869Eucalyptus grandisOryza punctata89.2269.7383.52182forward

Expression of CNT30534084

Peptides detected in this lncRNA

>peptide 1 (47 aa)
LGWSFRTKDQLRMVTGPVSIPFIGRAVMLWAVVDQKTVIGLGRLTSP*

>peptide 2 (66 aa)
PGLVISDKGPVENGDRACKHSLHWASSHALGRGGPEDSHWLGAAHITIDDGWFHTTRSIRLHPPING

Sequence

>CNT30534084
ACCTGGGTTGGTCATTTCGGACAAAGGACCAGTTGAGAATGGTGACAGGGCCTGTAAGCATTCCCTTCATTGGGCGAGCAGTCATGCTCTGGGCCGTGGT
GGACCAGAAGACAGTCATTGGCTTGGGGCGGCTCACATCACCATAGATGATGGGTGGTTTCACACAACGAGATCCATAAGATTGCACCCACCCATTAATG
GTGA