Detailed information on CNT30533996


BLAST search results

BLAST vs Swiss-Prot:
sp|Q42699|METE_CATRO, E-value = 8e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30491477Eucalyptus grandisOlea europaea34.0226.684.3483forward
CNT30711949Eucalyptus grandisGlycine max38.9316.0789.4795forward
CNT30555782Eucalyptus grandisOryza glaberrima28.2817.3486.9669forward
CNT30129110Eucalyptus grandisCorymbia citriodora97.1361.0894.94237forward
CNT30619828Eucalyptus grandisCajanus cajan25.4117.1390.3262forward
CNT30578457Eucalyptus grandisOryza barthii28.2812.1786.9669forward

Expression of CNT30533996

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MPQQEHQQNRFGREHSPQKDMILVPSMLQ*

>peptide 2 (40 aa)
STDQIKSKSSDTLQGSKNSICLSRNISKIGLDENIHPRKT*

Sequence

>CNT30533996
TCCACGGACCAAATCAAATCCAAATCCAGCGACACCCTTCAAGGAAGTAAGAACTCTATATGCCTCAGCAGGAACATCAGCAAAATAGGTTTGGACGAGA
ACATTCACCCCAGAAAGACATGATTCTAGTTCCAAGTATGCTTCAGTGAATGCTTGCAGTTGGGGAGAGTCAAGATCCAACACAAGGGTGGGCTCATCAA
ACTGAATCCATGAAGCGCCAGCTGCCTTAAGTTCGGAGACAACT