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Detailed information on CNT30533956


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39654|PSAL_CUCSA, E-value = 2e-89

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673169Eucalyptus grandisSetaria viridis25.546.4882.02178forward
CNT30520857Eucalyptus grandisSetaria italica25.518.8682.02178forward
CNT30639966Eucalyptus grandisNymphaea colorata27.3612.7281.68191forward
CNT3021623Eucalyptus grandisCitrullus lanatus62.8932.3378.36439forward
CNT30730016Eucalyptus grandisCorchorus capsularis46.9949.5582.01328forward
CNT30629841Eucalyptus grandisVigna unguiculata32.2338.4682.67225forward
CNT30507460Eucalyptus grandisNicotiana attenuata23.6454.4682.42165forward
CNT30710011Eucalyptus grandisGlycine max31.0950.2381.57217forward
CNT3094368Eucalyptus grandisSolanum tuberosum33.2489.5882.33232forward
CNT30182270Eucalyptus grandisSecale cereale22.2128.0883.87155forward
CNT30292923Eucalyptus grandisTriticum aestivum22.2167.9883.87155forward
CNT30390478Eucalyptus grandisTriticum turgidum25.514.9383.15178forward
CNT30564216Eucalyptus grandisActinidia chinensis22.3569.9684.62156forward
CNT30249690Eucalyptus grandisAvena sativa24.3627.8284.71170forward
CNT304588Eucalyptus grandisZea mays22.2112.0284.52155forward
CNT30129085Eucalyptus grandisCorymbia citriodora64.943.0293.82453forward
CNT30683149Eucalyptus grandisTriticum urartu22.2134.9983.87155forward
CNT30720963Eucalyptus grandisTriticum spelta17.7722.2683.87124forward
CNT30319122Eucalyptus grandisAsparagus officinalis28.2213.3281.22197forward
CNT3037832Eucalyptus grandisCucumis melo61.4650.9577.86429forward
CNT30582252Eucalyptus grandisEchinochloa crusgalli24.525.9583.63171forward
CNT30556884Eucalyptus grandisPanicum hallii24.523.5583.04171forward

Expression of CNT30533956

Peptides detected in this lncRNA

>peptide 1 (31 aa)
PFLPKRFRYTDMTLQLHLSLLYEFTSQSKEG*

>peptide 2 (53 aa)
MNLLHKVRKVEHIEEKVGPCDPGDPAEEEPAGELGPSICGLQLIRLLLPPGQG*

>peptide 3 (37 aa)
MRRSHTLSSRCSGSQPGLRRPMILLLLHTPCSSKGRP*

>peptide 4 (54 aa)
MLRITTRPPAANDPAAPAYSVFLKGPALTKGPTKRNPWARPTSTPRRSGFTAVL*

Sequence

>CNT30533956
CCATTCCTTCCCAAACGGTTCAGATATACAGACATGACTCTTCAACTTCATCTCTCTCTTCTGTATGAATTTACTTCACAAAGTAAGGAAGGTTGAGCAC
ATAGAGGAGAAAGTAGGCCCATGTGACCCCGGAGATCCCGCCGAAGAAGAACCCGCCGGTGAACTTGGCCCATCCATTTGCGGTCTGCAACTGATCAGGC
TCCTTCTTCCTCCCGGTCAAGGTTAGCGACGGTGCTGTCGAGGGCTCTCCTTCATTGAATGAGGCGATCCCATACATTGTCAAGCAGATGCTCAGGATCA
CAACCAGGCCTCCGGCGGCCAATGATCCTGCTGCTCCTGCATACTCCGTGTTCCTCAAAGGGCCGGCCTTGACGAAAGGGCCCACCAAGAGGAATCCGTG
GGCGAGGCCCACCTCGACGCCTCGGAGGAGCGGGTTCACGGCAGTCCTGTAGGCGGGGAGGTTGGAGAGGTACCATGCAATGAGCGGGCTGGATGTGACC
GGAGTCTCGAGGCTTCCAATGAAAGGGTCACCATTGAGGGGTTGAACCACTTGGAAGGTTGGCTGCATGCAAAAGGTAGATGCAGGAATTGAAACCCATC
AACTAATGTAACGAGTGAATGGAGCCACTCAGAGAATATGTATTCACAAATGAATGATAACATGCTATAATCTCTAAGGTTTTTTTTTTTTTTCTAAT