« Back to Eucalyptus grandis search


Detailed information on CNT30533721


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SUI4|PSAL_ARATH, E-value = 4e-80

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30516978Eucalyptus grandisJuglans regia30.3731.0981.6212forward
CNT30698134Eucalyptus grandisQuercus lobata29.371183.41205forward
CNT30376279Eucalyptus grandisArabidopsis thaliana53.5862.7578.07374forward
CNT30635301Eucalyptus grandisCapsicum annuum33.5258.9480.77234forward
CNT3084834Eucalyptus grandisVigna radiata38.469.6179.48268forward
CNT3075006Eucalyptus grandisBrassica juncea19.6330.4482.48137forward
CNT30614377Eucalyptus grandisArabis alpina15.7642.4783.64110forward
CNT30454500Eucalyptus grandisSaccharum spontaneum17.3433.4381.82121forward
CNT304795Eucalyptus grandisZea mays18.3428.3285.94128forward
CNT30610860Eucalyptus grandisGossypium raimondii14.3333.983100forward
CNT30217087Eucalyptus grandisKalanchoe fedtschenkoi29.0819.5480.79203forward
CNT30344816Eucalyptus grandisEragrostis tef13.4722.1286.1794forward
CNT30620323Eucalyptus grandisCajanus cajan45.5617.878.93318forward
CNT30360483Eucalyptus grandisLactuca sativa38.5461.4280.3269forward
CNT30570425Eucalyptus grandisVitis vinifera33.3813.4181.55233forward
CNT30644515Eucalyptus grandisCannabis sativa45.4254.8480.13317forward
CNT3027985Eucalyptus grandisTheobroma cacao31.9541.0783.41223forward
CNT30104607Eucalyptus grandisOryza rufipogon13.1825.6388.0492forward
CNT30578384Eucalyptus grandisOryza barthii13.6124.2387.3795forward
CNT30112090Eucalyptus grandisFicus carica32.9511.2483.04230forward
CNT30726872Eucalyptus grandisLupinus angustifolius28.65980.5200forward

Expression of CNT30533721

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MLRITTRPPAANDPAAPAYSVFLKGPALTKGPTKRNPWARPTSTPRRSGFTAVL*

>peptide 2 (53 aa)
MNLLHKVRKVEHIEEKVGPCDPGDPAEEEPAGELGPSICGLQLIRLLLPPGQG*

>peptide 3 (43 aa)
MSGLDVTGVSRLPMKGVTIEGLNHLEGWLHAKVDAGIETHQLM*

>peptide 4 (31 aa)
PFLPKRFRYTDMTLQLHLSLLYEFTSQSKEG*

>peptide 5 (37 aa)
MRRSHTLSSRCSGSQPGLRRPMILLLLHTPCSSKGRP*

Sequence

>CNT30533721
CCATTCCTTCCCAAACGGTTCAGATATACAGACATGACTCTTCAACTTCATCTCTCTCTTCTGTATGAATTTACTTCACAAAGTAAGGAAGGTTGAGCAC
ATAGAGGAGAAAGTAGGCCCATGTGACCCCGGAGATCCCGCCGAAGAAGAACCCGCCGGTGAACTTGGCCCATCCATTTGCGGTCTGCAACTGATCAGGC
TCCTTCTTCCTCCCGGTCAAGGTTAGCGACGGTGCTGTCGAGGGCTCTCCTTCATTGAATGAGGCGATCCCATACATTGTCAAGCAGATGCTCAGGATCA
CAACCAGGCCTCCGGCGGCCAATGATCCTGCTGCTCCTGCATACTCCGTGTTCCTCAAAGGGCCGGCCTTGACGAAAGGGCCCACCAAGAGGAATCCGTG
GGCGAGGCCCACCTCGACGCCTCGGAGGAGCGGGTTCACGGCAGTCCTGTAGGCGGGGAGGTTGGAGAGGTACCATGCAATGAGCGGGCTGGATGTGACC
GGAGTCTCGAGGCTTCCAATGAAAGGGGTCACCATTGAGGGGTTGAACCACTTGGAAGGTTGGCTGCATGCGAAGGTAGATGCAGGAATTGAAACCCATC
AACTAATGTAACGAGTGAATGGAGCCACTCAGAGAATATGTATTCACAAATGAATGATAACATGCTATAATCTCTAAGGTTTTTTTTTTTTTTCTAAT