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Detailed information on CNT30533654


BLAST search results

BLAST vs Swiss-Prot:
sp|Q09020|PR4_PHAVU, E-value = 6e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524561Eucalyptus grandisSetaria italica25.110.5682.93123forward
CNT30514302Eucalyptus grandisJuglans regia28.9824.8785.92142forward
CNT30180424Eucalyptus grandisSecale cereale24.4918.5587.5120forward
CNT30221624Eucalyptus grandisHordeum vulgare24.4917.787.5120forward
CNT30386243Eucalyptus grandisTriticum turgidum24.4917.7387.5120forward
CNT30249706Eucalyptus grandisAvena sativa24.4918.5285120forward
CNT30467515Eucalyptus grandisSaccharum spontaneum27.9618.6183.94137forward
CNT30135597Eucalyptus grandisLolium perenne24.4923.2186.67120forward
CNT307034Eucalyptus grandisZea mays24.2915.0885.71119forward
CNT30346089Eucalyptus grandisEragrostis tef23.8820.8285.47117forward
CNT30597257Eucalyptus grandisOryza meridionalis28.5728.0687.86140forward
CNT30355824Eucalyptus grandisLactuca sativa27.7617.4482.35136forward
CNT30371492Eucalyptus grandisOryza glumipatula28.5726.0787.86140forward
CNT3053146Eucalyptus grandisAmborella trichopoda28.9822.5480.28142forward
CNT30108688Eucalyptus grandisOryza longistaminata28.5724.9687.86140forward
CNT30104475Eucalyptus grandisOryza rufipogon28.5724.9187.86140forward
CNT30578401Eucalyptus grandisOryza barthii28.5725.0487.86140forward
CNT30581754Eucalyptus grandisEchinochloa crusgalli24.915.9585.25122forward
CNT30118085Eucalyptus grandisOryza nivara28.5726.2287.86140forward

Expression of CNT30533654

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MIYDVNSPLFRSFLSQKGGSSDKRKMEEQRPKEHRPKANENKPVMTE*

>peptide 2 (43 aa)
FQPRPHIKSRWARGGEIANRNRERGELGFCFEARGHTCCCCSC*

Sequence

>CNT30533654
CTTTCCAACCCCGTCCACATATAAAATCCCGTTGGGCTCGCGGGGGAGAAATCGCGAACCGAAATCGTGAGCGAGGAGAGTTAGGGTTTTGCTTCGAAGC
TCGAGGACATACCTGTTGTTGCTGCAGCTGCTGAAGTTCTTCCACCACCGCACCGGAGACGATGATCTACGACGTCAACTCCCCTCTCTTCCGATCTTTC
CTCAGCCAGAAGGGTGGCTCCTCCGACAAGAGGAAGATGGAAGAGCAGAGGCCGAAGGAGCATAGGCCCAAGGCCAATGAAAATAAACCTGTCATGACGG
AGTAAAATTTTACTTGTTGCATCTCCCTTCAGAGTCAAAGGTGGACGAGCGACCGAATGTTTCATTTGGAAGTGTGTTTGTCTACCACAATGTTCGAAGG
GTTTACTTTTTGGATGGGGATTGAGGACTGATTTCAATATTAAATTTCAGTGTGTTATTGGTTTTTATGGCAGGTTAATGAAAGCCAAAT