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Detailed information on CNT30533125


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LHJ8|SAP5_ARATH, E-value = 6e-51

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672179Eucalyptus grandisSetaria viridis14.0421.7389.0473forward
CNT30514234Eucalyptus grandisJuglans regia22.314.2682.76116forward
CNT3047482Eucalyptus grandisPrunus dulcis24.4219.4283.46127forward
CNT30170299Eucalyptus grandisPistacia vera24.428.1684.25127forward
CNT3091054Eucalyptus grandisSolanum tuberosum24.0413.6382.4125forward
CNT30444092Eucalyptus grandisAegilops tauschii20.1912.9885.71105forward
CNT30449351Eucalyptus grandisSaccharum spontaneum23.8518.7686.29124forward
CNT30141231Eucalyptus grandisLolium perenne20.1910.2382.86105forward
CNT30572839Eucalyptus grandisVitis vinifera24.6251.287.5128forward
CNT30330555Eucalyptus grandisDioscorea rotundata15.3825.8987.580forward
CNT30102874Eucalyptus grandisOryza rufipogon20.1911.9685.71105forward
CNT30580811Eucalyptus grandisEchinochloa crusgalli24.0412.2885.6125forward
CNT30117496Eucalyptus grandisOryza nivara20.1911.3585.71105forward

Expression of CNT30533125

Peptides detected in this lncRNA

>peptide 1 (47 aa)
LVVVAAVVPIGVTVLGAEEFAAPASESGEADPLPASGAPIHLPPGAV*

>peptide 2 (33 aa)
MLLVAGLPAKPQLLTQRVKASGTLNSVSSFSVL*

Sequence

>CNT30533125
GCCTTGTAGTCGTAGCTGCAGTCGTGCCGATCGGAGTAACGGTGCTCGGCGCAGAAGAGTTCGCCGCACCGGCATCGGAATCCGGTGAGGCCGACCCTCT
TCCGGCATCCGGAGCACCGATTCACCTCCCTCCTGGCGCTGTTTGACTCGGTCGAGGAAGGCGGCGAAGCGCCCGTGTCTCTCCTGATCATCCCCATCGC
GAGACCAGATCGGTCGGGCGACCTGGAAAAGGGGCCCGATCTGTGGATCCTCTCGGCGGAGAACTTGAGGACCGAGGGGCCGCCGGTAAGGCCGGCGGAG
GAAGAGGTGGAGGAGGAGGAGGAGGCGTTGAAACATTTCTGGCACATGTTGTTGGTGGCGGGGTTACCGGCGAAGCCACAGTTGTTGACGCAGAGGGTCA
AGGCCTCGGGTACCTTGAACTCCGTCTCCTCCTTTTCCGTCCTCTGAGCCATCTCCGACCACGAGGTCGATTTCGAGAGCTAGAGAAAGAGAGAGAGATT
GAACGAGGGAGGAGATAGGG