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Detailed information on CNT30533065


BLAST search results

BLAST vs Swiss-Prot:
sp|Q49KT9|YCF68_EUCGG, E-value = 9e-36

BLAST vs NONCODE:
NONMEST001876, E-value = 1e-38

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30712184Eucalyptus grandisGlycine max25.5332.1792.75193forward
CNT30637537Eucalyptus grandisCapsicum annuum22.2227.9583.33168forward
CNT30714122Eucalyptus grandisMalus domestica golden22.4941.1694.12170forward
CNT30362263Eucalyptus grandisSorghum bicolor26.0622.7790.36197forward
CNT30595932Eucalyptus grandisOryza meridionalis26.0614.8290.36197forward
CNT30148380Eucalyptus grandisBrachypodium distachyon24.613.7289.25186forward
CNT30575742Eucalyptus grandisOryza barthii26.0643.9788.32197forward

Expression of CNT30533065

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MIHISGLGADEHNELSSTTYMDKFVRSNN*

Sequence

>CNT30533065
CTCGGACCGCCCGGATCCCACGAGTGAATAGAAAGTTGGATCTACATTGGATCTCACCTGAATCGCCCAATCTATCCTCTTGAGGAGAGGTTTGGTTTCA
AACCCGGTTTGAATAGGAGAAGTACGCCATGCTAATGTGCCTTGGATGATCCACATCTCAGGGTTAGGCGCTGATGAGCACAATGAACTATCCAGTACAA
CCTACATGGACAAATTCGTTAGGTCGAATAATTGAATAGCATAGGTAGAAATATCAGTATTTCATTAATTTAAAAGGAAAAGTTCATACCATTTTTTATT
TATATATATTTTTAGAATTATTTTCTTTTTTTTTCTATATATAATATAATTTCTTTCTATATATAATATAATTTCTATATATATTTTTTTATTATTTTAT
TATTTTTTTATTAAATAAAATAGTAATAGAAAATATTTATTGGGGGTAGGTATTATATAAATTAAATGGGCCAAGCAGGAATTTTAGGAAACAGATCTTT
TAGATCTCTTTCCTTTTTTTTACCATTCCCTAAAATCGAAATATCATAATCTTTTTTCCTATTCCTGTAGATCGTATATACCTTATTTGTCTATTTTTAT
CTTGCCTAAGTAGATTATCTTGAGTTACACATACATTACTTTGGGCTAAACTAAAAAACGACTATTTTGAAAACGAGTCAATGATGACCCTCCATGGATT
CACCTATATAAGCCGCAGCTAAAGTTGCAAAAATAAGAGCTTGAATACCACTTGTT