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Detailed information on CNT30532914


BLAST search results

BLAST vs Swiss-Prot:
sp|P69322|UBIQP_PEA, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 1e-166

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30572920Eucalyptus grandisVitis vinifera56.1579.0782.4767forward
CNT30334104Eucalyptus grandisCynara cardunculus81.6348.9581.431115forward

Expression of CNT30532914

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MPSLSWIFAFTLSMVSELSTSKVMVFPVRVLTKICIPPRRRRTRWRVDSF*

>peptide 2 (44 aa)
MSLCWSGGIPSLSWILAFTLSIVSELSTSRVIVLPVRVFTKICI*

>peptide 3 (40 aa)
MVSELSTSRVMVLPVRVFTKICIPPLKRSTKWSVDSFWML*

>peptide 4 (39 aa)
QKRDIETASTGINRQSTKECLRLCSKAIHQKTSIHQKTS*

>peptide 5 (31 aa)
MVSELSTSKVIVFPVRVLTKICIPPLRRRTK*

>peptide 6 (30 aa)
MFQSNPSEDINPSEDIITLKWPTNLIDRKT*

Sequence

>CNT30532914
CGCAAAAAAGAGATATCGAAACAGCATCGACGGGAATAAATAGGCAATCCACTAAAGAGTGTCTCAGATTATGTTCCAAAGCAATCCATCAGAAGACATC
AATCCATCAGAAGACATCATAACTTTAAAATGGCCAACCAACCTAATAGACAGAAAAACTTGACTTCATGAAAAACCCTTCGGTGACATGAAAACTCAGA
AACCACCACGGAGACGGAGGACCAAGTGCAGAGTCGACTCTTTCTGGATGTTATAGTCAGCCAGAGTCCTCCCGTCTTCGAGTTGCTTCCCCGCAAAAAT
CAGCCTCTGCTGATCTGGCGGGATGCCTTCCTTATCCTGGATCTTTGCCTTCACGTTGTCGATGGTGTCTGAACTCTCCACCTCCAAAGTGATGGTCTTT
CCGGTCAGGGTCTTGACAAAGATCTGCATCCCACCACGCAGACGAAGGACGAGATGGAGAGTTGACTCCTTTTGAATATTGTAATCAGCCAGTGTCCTGC
CATCCTCAAGTTGCTTCCCTGCAAAAATCAACCGCTGTTGGTCTGGGGGGATTCCCTCCTTGTCCTGTATCTTTGCTTTGACATTATCGATCGTGTCAGA
GCTCTCCACCTCCAAGGTGATAGTCTTGCCAGTAAGGGTCTTTACAAAAATCTGCATGCCTCCCCTAAGACGCAGAACCAAGTGAAGAGTCGATTCTTTC
TGGATGTTATAATCTGCCAGAGTCCTGCCATCTTCTAGCTGCTTCCCAGCAAAAATGAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGAATTT
TCGCTTTGACATTGTCGATGGTGTCAGAGCTCTCAACTTCCAAAGTGATTGTTTTCCCAGTAAGAGTCTTGACAAAGATTTGCATTCCTCCTCTCAGACG
GAGAACCAAGTGAAGGGTGGATTCCTTTTGTATGTTGTAGTCTGCAAGCGTCCGGCCATCCTCGAGTTGCTTGCCAGCAAAGATCAACCGCTGCTGGTCT
GGGGGAATCCCTTCTTTGTCCTGGATTTTGGCCTTCACATTGTCAATGGTATCAGAACTCTCGACCTCGAGAGTAATGGTCTTGCCAGTGAGGGTCTTCA
CAAAGATCTGCATCCCACCTCTCAAACGAAGCACCAAGTGGAGTGTGGATTCCTTCTGGATGTTATAATCAGCCAAAGTGCGCCCATCCTCGAGCTGCTT
GCCTGCAAAGATGAGCCTTTGCTGGTCTGGGGGAATCCCCTCCTTGTCTTGGATCTTGGCCTTTACATTGTCGATTGTGTCTGAACTCTCAACCTCTAGG
GTGATAGTCTTGCCAGTAAGAGTTTTCACGAAGATTTGCATCTGAAAGATTCGAGGAAGTAATTAG