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Detailed information on CNT30532843


BLAST search results

BLAST vs Swiss-Prot:
sp|O23755|EF2_BETVU, E-value = 5e-78

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674834Eucalyptus grandisSetaria viridis23.9127.387.43175forward
CNT30316236Eucalyptus grandisCorylus avellana28.9646.1988.21212forward
CNT30728649Eucalyptus grandisCorchorus capsularis29.119.5680.75213forward
CNT30379936Eucalyptus grandisManihot esculenta18.9941.6287.05139forward
CNT30405832Eucalyptus grandisBeta vulgaris25.5523.3280.21187forward
CNT30488117Eucalyptus grandisOlea europaea24.8637.386.26182forward
CNT30711584Eucalyptus grandisGlycine max30.3331.5385.14222forward
CNT3085191Eucalyptus grandisVigna radiata24.8625.3880.77182forward
CNT30552635Eucalyptus grandisOryza glaberrima30.3321.3990.09222forward
CNT30143941Eucalyptus grandisMedicago truncatula29.3747.9980.93215forward
CNT30440797Eucalyptus grandisAegilops tauschii30.3330.4987.84222forward
CNT3059659Eucalyptus grandisArabidopsis lyrata27.646.5480.2202forward
CNT3014085Eucalyptus grandisZea mays28.1433.7788.35206forward
CNT30361520Eucalyptus grandisSorghum bicolor29.3731.4384.65215forward
CNT30369654Eucalyptus grandisOryza glumipatula58.8848.9884.92431forward
CNT30107537Eucalyptus grandisOryza longistaminata30.3324.1690.54222forward
CNT30332479Eucalyptus grandisDioscorea rotundata15.4439.9383.19113forward
CNT30149525Eucalyptus grandisBrachypodium distachyon15.9838.7483.76117forward
CNT30100253Eucalyptus grandisOryza rufipogon30.3320.1590.09222forward
CNT30575129Eucalyptus grandisOryza barthii30.3327.2790.09222forward
CNT30497456Eucalyptus grandisDigitaria exilis22.9557.5391.67168forward
CNT30116094Eucalyptus grandisOryza nivara30.3325.2390.09222forward
CNT30604019Eucalyptus grandisOryza punctata30.3365.6888.29222forward
CNT3050899Eucalyptus grandisCucumis sativus11.0732.1487.6581forward

Expression of CNT30532843

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MASACRTTSQTSKQIPRIFSSAKAPSFDAHWKPATTESLIS

>peptide 2 (87 aa)
MVKDTLRERLPRGCSSQCTRETKGLDNRQVDRLKQPGLGCQLRSIDNPPSSWNDLATTSVNGISMQNHITDLKANTTHILLSQSTFF*

Sequence

>CNT30532843
CTCTCTAGAAGCAAAAATACTCTGGTAGGAGAGTTAACAATATAAGTTGCGTTGGATCTTGGTACATTATGGCGCACCATTAACTCTTAAATCAGCTCCA
ACAAGCAAAACCACCTATGAGAAAATAAAAATTGCACCTCTCAAGACACCAGGACAATGTTCAAAACTCAAAACATGACGACAAGCAGAGCAATTAAACT
TGAAAGTTTGTGACTACTACTACACAAGGGACAGTATCCAAGAAAAGAGAACTAGCTCATGGAGCCACGGACACTGCTTCATCAATCCATCCTGCAATTA
CAGCTTGTCCTCGAACTCTGACAGCGGGGTCATCTGCTCCTTCAAGCCCTTCCTCTTGCGGATATCAGTAACCAGCTGAGCTGCCTGAGACCCAGACTCC
AGAGGATCAGACATCATCATATCCCAATGGTCAAAGACACACTGAGGGAACGCCTGCCCAGAGGTTGCAGCTCTCAATGTACTAGAGAAACCAAAGGACT
CGATAACAGGCAGGTAGACAGGCTCAAGCAGCCTGGGCTTGGCTGTCAACTGCGAAGCATAGATAACCCTCCTAGCAGTTGGAATGACCTGGCCACCACC
TCTGTGAATGGCATCAGCATGCAGAACCACATCACAGACCTCAAAGCAAATACCACGCATATTCTCCTCAGCCAAAGCACCTTCTTTTGATGCCCACTGG
AAACCAGCGACAACAGAATCCTTGATTTCATT