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Detailed information on CNT30532757


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6VAG0|TBA2_GOSHI, E-value = 1e-57

BLAST vs NONCODE:
NONGMAT000219, E-value = 1e-49

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640127Eucalyptus grandisNymphaea colorata23.1812.7890.2102forward
CNT30517711Eucalyptus grandisJuglans regia30.4525.2889.55134forward
CNT30372454Eucalyptus grandisArabidopsis thaliana23.4121.5588.35103forward
CNT30618174Eucalyptus grandisSesamum indicum29.0929.6389.06128forward
CNT3021397Eucalyptus grandisCitrullus lanatus26.3617.5283.62116forward
CNT30709049Eucalyptus grandisGlycine max54.3234.4989.54239forward
CNT30223592Eucalyptus grandisHordeum vulgare24.5527.6988.89108forward
CNT3059767Eucalyptus grandisArabidopsis lyrata27.7317.2184.43122forward
CNT3041114Eucalyptus grandisChlamydomonas reinhardtii30.9119.3587.5136forward
CNT30229012Eucalyptus grandisAnanas comosus49.3226.1883.87217forward
CNT30217674Eucalyptus grandisKalanchoe fedtschenkoi35.9144.2689.24158forward
CNT30204030Eucalyptus grandisHelianthus annuus35.6837.8384.71157forward
CNT30624589Eucalyptus grandisDaucus carota29.0925.8185.94128forward
CNT30340361Eucalyptus grandisEragrostis tef35.9130.2183.54158forward
CNT30356256Eucalyptus grandisLactuca sativa52.2744.480230forward
CNT30430260Eucalyptus grandisPapaver somniferum37.528.3586.06165forward
CNT30106557Eucalyptus grandisOryza longistaminata39.0980.3785.47172forward
CNT3024728Eucalyptus grandisPopulus trichocarpa44.7724.2685.79197forward
CNT30100887Eucalyptus grandisOryza rufipogon50.9129.0985.27224forward
CNT30333509Eucalyptus grandisCynara cardunculus48.6438.9178.5214forward
CNT3050225Eucalyptus grandisCucumis sativus18.6421.386.5982forward

Expression of CNT30532757

Peptides detected in this lncRNA

>peptide 1 (56 aa)
RISSPLLHHHPRPQQTQHRLLHSPSPGQQDPPEPRRTLPLPYPHRRTNAQRHAWHT*

>peptide 2 (70 aa)
ASVVLSFITILALSRLSTDFFIVLLQGSKILPSLGELSLFHTLTDVPMHKGTLGIHELHSHPLERHLLGT*

>peptide 3 (35 aa)
MRQQAMYLPWRGSHLAIIDDGSNALLVISATESCS*

>peptide 4 (33 aa)
MSCIHILWNDISSVHETASHVLAMARITLGHHR*

Sequence

>CNT30532757
CGCATCAGTAGTCCTCTCCTTCATCACCATCCTCGCCCTCAGCAGACTCAGCACCGACTTCTTCATAGTCCTTCTCCAGGGCAGCAAGATCCTCCCGAGC
CTCGGAGAACTCTCCCTCTTCCATACCCTCACCGACGTACCAATGCACAAAGGCACGCTTGGCATACATGAGCTGCATTCACATCCTTTGGAACGACATC
TCCTCGGTACATGAGACAGCAAGCCATGTACTTGCCATGGCGAGGATCACACTTGGCCATCATAGATGATGGCTCGAATGCACTGTTGGTGATCTCAGCC
ACCGAGAGCTGCTCGTGATGTGCTTTCTCGGCTGAGATGACTGGAGCATATGAAGAAAGCATAAAGTGGATCCTGGGGTAAGGGACCAGGTTGGTCTGGA
ATTCAGTGACATCCACATTCAAGGCTCCATCAAACCTCAG