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Detailed information on CNT3053266


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30547627Amborella trichopodaIpomoea triloba20.136.1388.7162reverse complement
CNT30618136Amborella trichopodaSesamum indicum27.2714.7688.184reverse complement
CNT30381752Amborella trichopodaManihot esculenta24.6824.8490.7976forward
CNT30587521Amborella trichopodaMusa acuminata23.0521.7190.1471forward
CNT3084328Amborella trichopodaVigna radiata19.8120.0790.1661forward
CNT30128358Amborella trichopodaCorymbia citriodora25.3228.2687.1878reverse complement
CNT30623435Amborella trichopodaDaucus carota18.5120.4389.4757reverse complement
CNT3030049Amborella trichopodaTheobroma cacao24.3524.4389.3375forward
CNT30120361Amborella trichopodaCitrus clementina25.3225.7488.4678reverse complement

Expression of CNT3053266

Peptides detected in this lncRNA

>peptide 1 (55 aa)
LSSVAWACNSSEGIQSGRTVTWLSWVGGLRLVQGVLSKLRVGCAPLTGGLGWIGT*

Sequence

>CNT3053266
GCTGAGCTCAGTAGCGTGGGCTTGTAACTCAAGCGAGGGCATACAAAGTGGTCGGACAGTCACTTGGCTCTCTTGGGTGGGTGGGTTGCGCTTGGTTCAA
GGTGTCCTCTCCAAGCTAAGAGTTGGCTGTGCCCCTTTGACCGGAGGGTTGGGGTGGATTGGTACTTAGAGTGGAGGAGAACGCGTGAGGCTGGTTTGAC
AGAGCAGCGATTACCTCCCGCTCTTGGCAGTGGAAGGATAACACGTTGATGTGTGATCTGCCCAAATCCAAACCCTAGAGCTCCAAACTCACATGGACAA
CCGCTTTT