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Detailed information on CNT3053264


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693027Amborella trichopodaOryza sativa30.9921.5681.44194forward
CNT30672972Amborella trichopodaSetaria viridis10.8630.2292.6568forward
CNT30272384Amborella trichopodaChenopodium quinoa33.5519.6483.81210forward
CNT30404662Amborella trichopodaBeta vulgaris33.3926.7383.25209forward
CNT30631438Amborella trichopodaVigna unguiculata28.2726.7484.75177forward
CNT30487971Amborella trichopodaOlea europaea26.231.5483.54164forward
CNT30709232Amborella trichopodaGlycine max33.8728.4284.43212forward
CNT30122306Amborella trichopodaPhyscomitrium patens20.9345.4982.44131forward
CNT30300179Amborella trichopodaTriticum aestivum33.3917.9184.69209forward
CNT30393350Amborella trichopodaTriticum turgidum33.3920.8884.21209forward
CNT30171906Amborella trichopodaTrifolium pratense28.9120.7381.22181forward
CNT30658759Amborella trichopodaTriticum dicoccoides25.7227.281.99161forward
CNT30311914Amborella trichopodaCamelina sativa24.2824.683.55152forward
CNT3062430Amborella trichopodaArabidopsis lyrata35.4619.2578.83222forward
CNT303614Amborella trichopodaZea mays28.5931.487.15179forward
CNT30685087Amborella trichopodaTriticum urartu31.3136.7783.16196forward
CNT30354596Amborella trichopodaLactuca sativa33.8719.180.19212forward
CNT30328300Amborella trichopodaAsparagus officinalis43.2990.9480.07271forward
CNT3037990Amborella trichopodaCucumis melo28.1259.0684.66176forward
CNT30101573Amborella trichopodaOryza rufipogon21.4115.8282.09134forward
CNT30116632Amborella trichopodaOryza nivara19.0131.0786.55119forward
CNT30558331Amborella trichopodaPanicum hallii24.7618.7280155forward

Expression of CNT3053264

Peptides detected in this lncRNA

>peptide 1 (57 aa)
ISFALSLSNTSLNIISAISLTSSLVSCLKTIISSSLFKNSGLKYCLSSSVTKLLMRL*

>peptide 2 (90 aa)
FLCLKPLKHLPQHYISNLLNLKFGELPKDYHLIKPVQELRSEILLELLCDQALNAIITAILLIVVQIKPNSSATLLDYATAHIREFGASC*

>peptide 3 (31 aa)
MGLLGFLSPTLALLMAREMALTASSWPITRL*

>peptide 4 (33 aa)
MLKTSGWAFSISSKSTTVYGLRRTASVNCPPSV*

Sequence

>CNT3053264
ATTTCCTTTGCCTTAAGCCTCTCAAACACCTCCCTCAACATTATATCAGCAATCTCCTTAACCTCAAGTTTGGTGAGTTGCCTAAAGACTATCATCTCAT
CAAGCCTGTTCAAGAACTCAGGTCTGAAATATTGCTTGAGCTCCTCTGTGACCAAGCTCTTAATGCGATTATAACTGCTATCCTTCTCATCGTAGTCCAA
ATCAAACCCAATTCGTCTGCCACCCTTCTCGATTACGCTACTGCCCACATTAGAGAATTTGGAGCATCATGTTGAAAACATCAGGATGGGCCTTCTCAAT
CTCATCAAAGAGCACTACAGTGTATGGTCTTCGACGCACTGCCTCAGTTAATTGCCCACCCTCAGTGTAGCCAACATAACCAGGTGGTGATCCAATGAGC
TTTGAAACAGTGTGGCGCTCCATGAACTCACTCATATCAAGGCGAATCATGGCTTCTTCAGAGCCGAAATAGTAGGCAATGGGCCTATTAGGGTTTTTGA
GTCCCACTCTGGCCCTCCTGATGGCTCGAGAAATGGCTCTTACTGCCTCGTCTTGGCCTATTACACGCTTGTGAAGGGTCTCTTCCATTTTGAGAAGGCG
GTCAGATTCATCGGACGAGACCTTCT