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Detailed information on CNT30532478


BLAST search results

BLAST vs Swiss-Prot:
sp|P17598|CATA1_GOSHI, E-value = 4e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640148Eucalyptus grandisNymphaea colorata20.193.885.7184forward
CNT30281430Eucalyptus grandisChenopodium quinoa25.7214.0685.05107forward
CNT3070085Eucalyptus grandisQuercus suber43.0327.4579.33179forward
CNT30405510Eucalyptus grandisBeta vulgaris38.734.2682.61161forward
CNT30708944Eucalyptus grandisGlycine max25.4818.6386.79106forward
CNT3046375Eucalyptus grandisPrunus dulcis38.723.0781.99161forward
CNT3098188Eucalyptus grandisSolanum tuberosum38.2232.0681.76159forward
CNT3085325Eucalyptus grandisVigna radiata20.6712.1684.8886forward
CNT30542456Eucalyptus grandisBrassica napus43.5141.979.01181forward
CNT30263082Eucalyptus grandisBrassica rapa44.9555.8280.21187forward
CNT30715065Eucalyptus grandisMalus domestica golden38.711.3280.75161forward
CNT30154268Eucalyptus grandisPrunus persica38.733.8281.99161forward
CNT30570453Eucalyptus grandisVitis vinifera52.8850.1181.36220forward
CNT30704833Eucalyptus grandisPrunus avium30.5317.7981.1127forward

Expression of CNT30532478

Peptides detected in this lncRNA

>peptide 1 (88 aa)
MLEARSFSAPLSSKQKNKDHYLFIPVHDIHETIMVVVVMSALGSINGELKVVWSKAISVSIRIGENPSLEKLIIGVIDARDHKCWVKR*

Sequence

>CNT30532478
TTCCTTTTTTATCAAAAAACAAACTGATTCAAGTCGAGCGTTGCATCAATAGACTACTATAACCAATTCAGATCTCTGTACAAGCCGCTAAAAACATGTT
ATTAGGTAATGCTAGAGGCACGTTCATTCTCAGCGCCGTTATCGAGCAAACAGAAAAATAAAGATCATTACCTCTTCATCCCTGTGCATGATATTCATGA
AACCATCATGGTGGTTGTTGTGATGAGCGCACTTGGGAGCATTAACGGGGAGTTGAAGGTAGTTTGGTCCAAGGCGATATCGGTGAGTATCAGAATAGGC
GAAAATCCTAGCTTGGAGAAGCTTATCATTGGAGTAATAGATGCCAGGGACCACAAATGCTGGGTTAAACGCTAGCTGCTCATTCTCAGCGATATCGGTG
AGTATCGGAATAGGCG