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Detailed information on CNT30532384


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG85|UBI1P_NICSY, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-178

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30200107Eucalyptus grandisPisum sativum56.3194.1382.25834forward
CNT30709517Eucalyptus grandisGlycine max62.5399.6883.05926forward
CNT30637282Eucalyptus grandisCapsicum annuum92.369.4381.861367forward
CNT3097291Eucalyptus grandisSolanum tuberosum92.4488.982.11369forward
CNT30704854Eucalyptus grandisPrunus avium92.7877.0682.91374forward
CNT30642981Eucalyptus grandisCannabis sativa61.4481.1183.52910forward
CNT3026527Eucalyptus grandisPopulus trichocarpa58.0788.0284.19860forward
CNT30120672Eucalyptus grandisCitrus clementina92.174.8280.571364forward
CNT30334105Eucalyptus grandisCynara cardunculus90.6856.9680.711343forward

Expression of CNT30532384

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVSELSTSKVIVFPVRVLTKICIPPLRRRTK*

>peptide 2 (44 aa)
MSLCWSGGIPSLSWILAFTLSIVSELSTSRVIVLPVRVFTKICI*

>peptide 3 (40 aa)
MVSELSTSRVMVLPVRVFTKICIPPLKRSTKWSVDSFWML*

>peptide 4 (50 aa)
MPSLSWIFAFTLSMVSELSTSKVMVFPVRVLTKICIPPRRRRTRWRVDSF*

>peptide 5 (48 aa)
MECGLLLNVIISQGAPILELLACKDEPLLVWGNPLLVLDLGLYIVDCV*

Sequence

>CNT30532384
CAATCCATCAGAAGACATCATAACTTTAAAATGGCCAACCAACCTAATAGACAGAAAAACTTGACTTCATGAAAAACCCTTCGGTGACATGAAAACTCAG
AAACCACCACGGAGACGGAGGACCAAGTGCAGAGTCGACTCTTTCTGGATGTTATAGTCAGCCAGAGTCCTCCCGTCTTCGAGTTGCTTCCCCGCAAAAA
TCAGCCTCTGCTGATCTGGCGGGATGCCTTCCTTATCCTGGATCTTTGCCTTCACGTTGTCGATGGTGTCTGAACTCTCCACCTCCAAAGTGATGGTCTT
TCCGGTCAGGGTCTTGACAAAGATCTGCATCCCACCACGCAGACGAAGGACGAGATGGAGAGTTGACTCCTTTTGAATATTGTAATCAGCCAGTGTCCTG
CCATCCTCAAGTTGCTTCCCTGCAAAAATCAACCGCTGTTGGTCTGGGGGGATTCCCTCCTTGTCCTGTATCTTTGCTTTGACATTATCGATCGTGTCAG
AGCTCTCCACCTCCAAGGTGATAGTCTTGCCAGTAAGGGTCTTTACAAAAATCTGCATGCCTCCCCTAAGACGCAGAACCAAGTGAAGAGTCGATTCTTT
CTGGATGTTATAATCTGCCAGAGTCCTGCCATCTTCTAGCTGCTTCCCAGCAAAAATGAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGAATT
TTCGCTTTGACATTGTCGATGGTGTCAGAGCTCTCAACTTCCAAAGTGATTGTTTTCCCAGTAAGAGTCTTGACAAAGATTTGCATTCCTCCTCTCAGAC
GGAGAACCAAGTGAAGGGTGGATTCCTTTTGTATGTTGTAGTCTGCAAGCGTCCGGCCATCCTCGAGTTGCTTGCCAGCAAAGATCAACCGCTGCTGGTC
TGGGGGAATCCCTTCTTTGTCCTGGATTTTGGCCTTCACATTGTCAATGGTATCAGAACTCTCGACCTCGAGAGTAATGGTCTTGCCAGTGAGGGTCTTC
ACAAAGATCTGCATCCCACCTCTCAAACGAAGCACCAAGTGGAGTGTGGATTCCTTCTGGATGTTATAATCAGCCAAAGTGCGTCCATCCTCAAGCTGCT
TCCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATTCCCTCCTTATCTTGAATCTTGGCCTTAACATTGTCAATTGTGTCTGAGCTTTCGACCTCAAG
GGTAATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGCCACCTCTCAGACGAAGCACCAAATGGAGTGTGGACTCCTTCTGAATGTTATAATCA
GCCAGGGTGCGCCCATCCTCGAGCTGCTTGCCTGCAAAGATGAGCCTTTGCTGGTCTGGGGGAATCCCCTCCTTGTCTTGGATCTTGGCCTTTACATTGT
CGATTGTGTCTGAACTCTCAACCTCTAGGGTGATAGTCTTGCCAGTAAGAGTTTTCACGAAGATTTGCATCTGAAAGATTC