Detailed information on CNT30532211


BLAST search results

BLAST vs Swiss-Prot:
sp|Q49KT6|YCF2_EUCGG, E-value = 4e-68

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30195107Eucalyptus grandisPisum sativum15.0122.5892.8698reverse complement
CNT30559395Eucalyptus grandisActinidia chinensis25.119.288.41164forward
CNT3085348Eucalyptus grandisVigna radiata28.1874.1990.22184reverse complement
CNT30239222Eucalyptus grandisBrassica oleracea41.0447.5285.07268reverse complement
CNT3058323Eucalyptus grandisAmborella trichopoda52.0735.9488.53340reverse complement

Expression of CNT30532211

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MLFWREKLFHQSSHRYLTYSYLTIFHKVVTKGLTCTNFSILQFDPIH*

>peptide 2 (40 aa)
MNLFDLEGKNLYQYLNFNSNMGLIHIPCYEKYVPFEKRKK*

Sequence

>CNT30532211
AACAAATTCAATTTCTTCATCATATGATTTGATAAAATATTTTGAATCTATGTCGAATTGGTAGATAATCTCAATCAAATGAATTTCGTTTTAATGGGAG
TCAATTTATTAATTAATTAGGATCAGCCTTGAAACAATTCATTACATTGATATTTATCAAATCTAATTTTGACCCTATACTATACTATCTAGGTAGGTCA
AATTTTTCGTTAATGAATGAACCACACTAGCCATTCAAAGTCTACTACATAGATTTCTATAAATAGAATCTATAGATAGAAATATGCTTTTTTGGAGAGA
GAAACTATTTCACCAATCGAGTCACAGGTATCTAACATATTCATACCTAACGATTTTCCACAAAGTGGTGACAAAAGGTCTAACTTGTACAAATTTTTCC
ATTTTGCAATTTGATCCAATCCATTAGTTCATAGAGCTATTTACTCGATCGTAGACATTTCTGGAACACCTCTAACAGAGGGACAAATAGTCAATTTTGA
AAGAACTTATTGTCAACCTCTTTCAGATATGAATCTATTTGATTTAGAAGGGAAGAACTTGTATCAATATCTCAATTTCAATTCAAACATGGGTTTGATT
CACATTCCATGTTATGAGAAATATGTACCATTCGAAAAGAGGAAAAAATGAAG