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Detailed information on CNT3053197


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30406248Amborella trichopodaBeta vulgaris12.3378.1787.31197forward
CNT30201820Amborella trichopodaPisum sativum33.194.4691.12529forward
CNT30223492Amborella trichopodaHordeum vulgare7.2631.3591.38116reverse complement
CNT30229065Amborella trichopodaAnanas comosus16.1570.4991.86258forward
CNT30622952Amborella trichopodaDaucus carota4.7632.4892.1176reverse complement
CNT30153321Amborella trichopodaPrunus persica11.9539.3891.62191reverse complement
CNT30425623Amborella trichopodaPapaver somniferum13.8348.4691.86221forward
CNT3025558Amborella trichopodaPopulus trichocarpa14.7729.1492.37236forward
CNT3036892Amborella trichopodaCucumis melo20.1529.5492.55322forward
CNT30147748Amborella trichopodaBrachypodium distachyon35.9285.1690.94574forward

Expression of CNT3053197

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MIQCKQKFLDSWRHRTTYKLSCLHIHHLSLQQLFQ*

>peptide 2 (41 aa)
MKMSPIETKKYRLVCHPHHHRRSFSKKPANGGIRPRDKRQG*

>peptide 3 (48 aa)
MIKPLKPIQVDSKMPRACTWVKQPSQKHPEKVFDDITFARNSGGVLFL*

>peptide 4 (66 aa)
SSLIMGNMKEKLVNKQIVFLFKLFAHFPFTLFLLFFSYCSFSNCLIKNKKIVLKVTILKNTFLKNK*

>peptide 5 (73 aa)
MPDRMLWQLGKVQGILAEPWKWDRREKVGVHPTNWEDELNMEIRDWCERQRNVIEAVNNPTCSRLWQHTCIGM*

Sequence

>CNT3053197
ATCATCCTTAATTATGGGGAATATGAAAGAGAAACTTGTAAATAAACAGATTGTTTTCCTTTTCAAACTGTTTGCGCATTTTCCTTTTACTCTTTTCCTT
TTATTCTTTTCCTATTGTTCTTTTTCAAACTGTCTCATCAAAAATAAAAAGATCGTATTAAAAGTAACCATTCTTAAAAATACCTTTTTAAAAAATAAGT
AGTAAAAGCACCTTCAGGTAATTTTAACCTATTTTCTAGGTTTTTACTTCTTTTTTTTGTGCATGTATTGGTGGCTTATAAGAGAAATTTTTTTTGTGCA
TGTTTGGTGTAGTGCTGGAGCTATGAGCACTTTATGATTAAACCCCTTAAGCCGATACAAGTAGATTCGAAAATGCCTAGAGCTTGCACGTGGGTTAAAC
AACCGAGCCAGAAACACCCAGAGAAAGTGTTTGATGACATCACATTTGCACGGAATAGTGGTGGTGTTCTATTTTTGTAGTTTACTAAGGAATCATATAT
TTATATGAGTTTTTATGGTGGCATATTTGTTTTCTCAAGGTGAATTGGGAGCCATATGAGGAGCCTCGAGGAGAGGACTATAGAAAATTAGACCAAATCA
GCAAGGAAGCTGCATTTTACCGGTCATTCTTCAGTTTTAATATAGCAGAGTATTACATGCCCGATCGCATGCTTTGGCAACTTGGGAAGGTCCAAGGGAT
TCTTGCTGAGCCTTGGAAGTGGGATAGGAGGGAGAAGGTTGGTGTGCACCCCACAAATTGGGAGGATGAGTTGAACATGGAGATTAGGGATTGGTGCGAA
CGTCAACGCAATGTTATTGAAGCTGTCAATAACCCCACCTGCTCCCGGTTGTGGCAACACACATGTATAGGGATGTAAGAAGGCGCATTTGAAAATGAAG
GGTATTCCAAGTATTTCGTAGTTGCGGTCCATGAATTGTTAGTAAATAACATGAAGATGAGTCCTATCGAAACCAAGAAATATAGGCTCGTCTGCCATCC
TCACCATCATAGACGGAGTTTTTCGAAAAAACCTGCTAATGGAGGAATACGTCCTAGGGATAAGCGACAGGGCTGAAGAGAGAGCCAAATAAGGATATTT
CGTGTATAATCCTGCATAATCTTGAATGTTTTCAGTTCCGGTACGTGGACCAAATGATACAATGTAAGCAAAAGTTCCTAGATTCGTGGAGACATAGAAC
AACATATAAGTTATCATGCTTACATATCCATCATTTGAGTCTCCAACAATTATTCCAATAATTACATATCCGATTTGACCTATAGACGAATATGCAAGCA
TACGTTTCATGCTTGTTTGAGTAATAGCAATGAGATTCCCCAATATCATGTTAAGAATAGCTAGGATTTCAAGAAGAATATGCCATTCGTTCGATGAGAA
ATAGAAAGGAATATCGAAAATTCGAGTGGCTAAAGCTGAAGTAGCTACGTTGTAAGTAACAGAAAGAAAAGCAACGACTGGAGTGGGAGAGTCAGAGTAA
AATAGAGGATTCCTCACTTCTTTCTCTCATTCAAAACTGTGCATGAGACTTTCATCTCGCATGACTCCTACGTGATAAAAGAAAGAAGATGAGTTCTT