« Back to Amborella trichopoda search


Detailed information on CNT3053146


BLAST search results

BLAST vs Swiss-Prot:
sp|Q09020|PR4_PHAVU, E-value = 2e-08

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524561Amborella trichopodaSetaria italica21.5911.6782.35136forward
CNT30639598Amborella trichopodaNymphaea colorata23.8125.1385.33150forward
CNT30533654Amborella trichopodaEucalyptus grandis22.5428.9880.28142forward
CNT30549812Amborella trichopodaIpomoea triloba21.5925.5284.56136forward
CNT30514302Amborella trichopodaJuglans regia22.8625.2284.72144forward
CNT30275526Amborella trichopodaChenopodium quinoa21.92581.88138forward
CNT3084841Amborella trichopodaVigna radiata22.8626.9783.33144forward
CNT307034Amborella trichopodaZea mays21.5917.2482.35136forward
CNT30624138Amborella trichopodaDaucus carota21.2725.1483.58134forward
CNT30346089Amborella trichopodaEragrostis tef23.0225.882.76145forward
CNT30597257Amborella trichopodaOryza meridionalis22.0627.8682.73139forward
CNT30371492Amborella trichopodaOryza glumipatula22.0625.8882.01139forward
CNT30108688Amborella trichopodaOryza longistaminata22.0624.7882.73139forward
CNT30104475Amborella trichopodaOryza rufipogon22.0624.7382.73139forward
CNT30578401Amborella trichopodaOryza barthii22.0624.8782.73139forward
CNT30118085Amborella trichopodaOryza nivara22.0626.0382.73139forward

Expression of CNT3053146

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MIYDVNSPLFRSFLSQKGGASDRRKTEEQKPKEQKPKANENKPVMTE*

>peptide 2 (71 aa)
FINRWSLLTPINKQSLGDFWAVRSFAVESSRAGNKGFVAEQGLRVPWKVSHDLRREFPPLQVLSQPERWRL*

>peptide 3 (43 aa)
MEKVHIRCEPYTIDVRCPSKIVLKSVPMLENYLINHLWKKNRPL

Sequence

>CNT3053146
GCTTTATTAATCGGTGGTCATTACTAACCCCTATAAATAAGCAATCGCTTGGGGATTTTTGGGCAGTACGCTCATTCGCTGTTGAAAGTAGCAGAGCCGG
GAACAAGGGTTTCGTAGCGGAGCAAGGACTTAGGGTTCCGTGGAAGGTAAGCCATGATTTACGACGTGAATTCCCCCCTCTTCAGGTCCTTTCTCAGCCA
GAAAGGTGGCGCCTCTGATAGAAGGAAAACAGAAGAGCAGAAGCCCAAGGAGCAGAAGCCCAAAGCAAATGAGAACAAGCCTGTTATGACCGAGTGAGAT
AAAATGGATGGTTGTGTGTGTGCTTGATTTGATTTTGAAATAGGGATATAATGAACATGCATGTAATTGTTCACATTTCTTCATAGAGTTACACAACTCT
GTTTCAGAGTCCTATTTCTCGTTCGCTCAATATGATGTGATTTTGTTGCCAAAGTTGCCAAAACAAATGTTATTTACTTGCATTTAGACATAGGCATATG
GAAAAAGTGCATATAAGGTGTGAACCCTATACCATTGATGTAAGGTGCCCCTCAAAAATCGTCTTGAAGAGTGTTCCGATGTTGGAAAACTATCTAATTA
ATCATTTATGGAAAAAAAATCGACCTTTAG