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Detailed information on CNT30531354


BLAST search results

BLAST vs Swiss-Prot:
sp|Q49KU5|NU6C_EUCGG, E-value = 3e-51

BLAST vs NONCODE:
NONMEST004538, E-value = 2e-59

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317759Eucalyptus grandisCorylus avellana67.1387.8490.511791forward
CNT30518502Eucalyptus grandisJuglans regia9.3365.0193.17249forward
CNT30615574Eucalyptus grandisSesamum indicum56.41101.0788.171505forward
CNT30406240Eucalyptus grandisBeta vulgaris9.5298.0791.34254forward
CNT30201817Eucalyptus grandisPisum sativum22.8698.7188.03610forward
CNT30712407Eucalyptus grandisGlycine max42.7391.9485.881140forward
CNT30569544Eucalyptus grandisActinidia chinensis67.9949.0989.471814forward
CNT30589541Eucalyptus grandisMusa acuminata26.588.2683.73707forward
CNT30237694Eucalyptus grandisBrassica oleracea25.7562.7488.36687forward
CNT30659065Eucalyptus grandisTriticum dicoccoides7.0833.6985.71189forward
CNT30262672Eucalyptus grandisBrassica rapa25.69.5488.73683forward
CNT30608772Eucalyptus grandisGossypium raimondii11.6999.3691.67312forward
CNT30215974Eucalyptus grandisHelianthus annuus24.7890.388.2661forward
CNT30624957Eucalyptus grandisDaucus carota30.3250.8887.14809forward
CNT30689544Eucalyptus grandisTriticum urartu25.610.9382.87683forward
CNT30596717Eucalyptus grandisOryza meridionalis28.5281.8384.49761forward
CNT30360555Eucalyptus grandisLactuca sativa4199.9189.761094forward
CNT30151942Eucalyptus grandisPrunus persica45.852.0789.031222forward
CNT3057989Eucalyptus grandisAmborella trichopoda19.5799.4387.93522forward
CNT3035415Eucalyptus grandisCucumis melo24.8999.489.91664forward
CNT30148081Eucalyptus grandisBrachypodium distachyon33.4788.1583.65893forward
CNT30116024Eucalyptus grandisOryza nivara15.5292.4185.02414forward

Expression of CNT30531354

Peptides detected in this lncRNA

>peptide 1 (42 aa)
VQMEEKNLLINEFQFVDYTYQICSIIWFDFVVQIIPYQDVSK*

>peptide 2 (58 aa)
MLFLSLLILREVVNREYPSPFSFLYNERSWKEVVNNRLPREMGKRNFHPDLIIGLFLV*

Sequence

>CNT30531354
GAGTTCAAATGGAAGAAAAAAATCTGTTGATAAATGAATTCCAATTTGTTGACTATACCTATCAAATCTGCTCGATAATCTGGTTTGACTTTGTCGTCCA
GATAATCCCGTACCAAGACGTATCTAAATAGTAGTCATTAGTGAAACCAAAATACTTGTACAAACCAACGAAGTAATCCCATCTCCAACAGTCCAAAGAT
TCAAATCTTTGTAATATTCTGAACCATTCATGAACATCACAGCAAATAGAATTAAAACGTTTATAGCTCCTACATAAATAAGGAGCTGCGCAGCCGCTAC
AAAATGGGAGTTTGATAGAATATAAATAAGGATATACAAACAAGAACCAATCCAAGGAAAAGGCAGAATAAATTGGATTGGTAAGTAATACCACCCCTAG
ACTTCCTAATATAAGACCTGATCCCAGAAAACTAAAAGAAAATCATGTATTGGTCCAGGCAAATCCATTATTATATGTAAAGAAAAATAAATTGAAATGT
TTTTCATGATTTTATTGACTCGACAAGGAATTTTTTAGGATATGCTCCTAATTGCATTTAATTCAAATCGAATGGATTAAAAATGGGTCTAGGTCCAATT
AGTGGACCAATATAATATGGTTTTCTCTTTACCCAAAAAATGGAAAAAGGGTAATTTAGCTCAAAACTGAAATTATATTATTAGATTCAATTTTCAATCT
AACTTTAATCGTACTTTTACCAACTAATCAACAGTTAATTGGAATTTTAGTTATTGACCAACAAAAAAAAATAAAGAACTCATTCCTGTAGATAGATCAA
ATTGAACCCTACTAATTGGTGGAGATTCCTCTTTAATCAAAAATCAAAGGGTTTTCACATTTTTTTATTTTATTATTATTTGAGGCGAATTCGAAATTGT
TCGAATTGTATAATCGTTAATTACTGACATTGGTAAACGACCCAATGCGATTGATTATAATTCAATTCGTGACGATCATAAGTAGAAAGTTCATATTCTT
CAGTCATTGATAAACAATTTGTTGGACATACTCAACACAGTTACCACAAAAAATACAAATTCCGAAATCAATACTGTAATTAAGCAAGCGTTTCTTTCGT
ATACCAGTTTCCAATTTCCAATCAACAACAGGTAGATCTATAGGACATACACGAACACATACTTCACAAGCAATGCATTTATCAATTCAAAATGGATTCG
GCCGCGGAAACGCTCAGATGTAATTAATTTTTCATAAGGATATTGAATAGTTACAGGTAAACGATTTGCGTGAGATAAGGTAATCATGAACCCTTGACCA
ATGTACCTTGCAGCTCGTACTGTTTGTTGACCGTAATTCATGAACCCAGTTACCATAGGGAACATATCGTAAAGATCTATGAATAATTTATGTTGTTTCT
TTCTCTGTTGATATTGAGAGAAGTCGTAAATCGAGAATATCCTAGTCCTTTTTCTTTCCTTTACAATGAAAGGAGTTGGAAAGAAGTTGTTAATAATAGA
TTACCGAGAGAAATGGGTAAAAGAAATTTCCATCCAGATTTAATAATTGGTCTATTCTTAGTCTAGGTAAAGTCCATCTTGTTGTGATAGAAATAAACAA
GAAGAAATAAGTTTAGCTAATGTAATAAAAATACCAATTGTCGTTCCAAAGACTCTACCTACTTTATTTATTTCAAATAGCTCAGAACGAATATGTAAGG
AATAGAGATATTCCAACCCCCTAAGTAAAGAACTGTTACAAATAACGAAGAAACTATAGATTTAGATAGGAAGCAACATAAAATAACCCAAATTTGATAC
CCGAATATTCGGTTTGATAACCTGCTACTAATTCTTCCTCTGCTTCTGGTAATCGAAAGGTAATCTCTCACATTCTGCTAGGGAAGAAATTAGAAAAATG
AAAAACCCTATAGGTTGACGCCACAAATTCCATCCCCAAAACCATATTTGGACTGGGCCTCAACTATATCAACTGTACTTGAACTGTTAGATAGTAGAGA
TATTGATAACACACAAAGAGTTAATGGTATTTCATAACTAATCGATTGAGCAGCGGCTCGTAGACCACCTAAAAAAGAATATTTATTATTGATCCATATC
CTGACATAAGAAGTCCAATGGGAGCAATACTGGAAATGGCAATCCATAAAAAACACCGATATTGAGATCAGATAAAACAAGGTGATAACTAAAAGGAATT
ACTGAATAACTTAGTAAAATGGATATAACTGCTATGGATGGTCCTATACTGAATAAACGAGTATCTCTCGAGATGGAAAAAGATTCTCTTTGAAAATAAG
TTTGTCCCATCTGCTAAAGCTTGAAGAATTCCCAAAGGACCGGCGTATTCGGGACCAATACGTTGTTGTATTCCTGCGGATATTCTCTTTCTAACCACAC
AATTACGAGTACACCTATGTGATTCCTAATACAAGAGTCAAAATAGGTAAAACCATCCCTATGATTCCATAGACTTCTTTTAAAGATTCCAATCTAGAAA
AGAATTTAGATCTGTACTTCTGTTGTATCAATTATCATTTTAACGATCAACTTCTCCCATAATGATATCTATGCTACCTAGTATGTCATAATATCGGCCA
ATTTCATTCTTTTAACTAACTGAGGAAGAATTTGCAAATTGATAAAACCAGGTGGACGAATTTTCCAC