« Back to Eucalyptus grandis search


Detailed information on CNT30531232


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639970Eucalyptus grandisNymphaea colorata81.7281.2792.812768forward
CNT30318007Eucalyptus grandisCorylus avellana81.9679.4395.172776reverse complement
CNT30519322Eucalyptus grandisJuglans regia100.0698.5794.693389forward
CNT30619309Eucalyptus grandisSesamum indicum52.3880.7594.761774reverse complement
CNT30283199Eucalyptus grandisChenopodium quinoa80.43100.1195.152724forward
CNT3021656Eucalyptus grandisCitrullus lanatus100.0355.9694.833388forward
CNT30632331Eucalyptus grandisVigna unguiculata100.03100.0694.333388forward
CNT30195048Eucalyptus grandisPisum sativum98.5288.7393.773337forward
CNT30508033Eucalyptus grandisNicotiana attenuata92.4494.0293.133131forward
CNT30711135Eucalyptus grandisGlycine max79.5184.7794.622693forward
CNT3047210Eucalyptus grandisPrunus dulcis75.279.1794.272547forward
CNT30383013Eucalyptus grandisTriticum turgidum74.1494.6192.232511forward
CNT30311297Eucalyptus grandisCamelina sativa59.58100.292.622018forward
CNT3060563Eucalyptus grandisArabidopsis lyrata65.07100.5994.12204reverse complement
CNT3076930Eucalyptus grandisBrassica juncea93.592.1794.13167forward
CNT30265711Eucalyptus grandisBrassica rapa75.3899.6593.772553forward
CNT30433917Eucalyptus grandisPapaver somniferum77.3396.0794.582619forward
CNT3023562Eucalyptus grandisPopulus trichocarpa65.99100.1395.172235reverse complement
CNT3035495Eucalyptus grandisCucumis melo97.962.9694.63316forward
CNT30583181Eucalyptus grandisEchinochloa crusgalli66.5896.293.752255forward
CNT30335982Eucalyptus grandisCynara cardunculus96.2299.388.523259reverse complement

Expression of CNT30531232

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MDRCGLQWRPKPGPSIRPWKRRHCDCGMHHAPHGVLRHLRAPGIG*

>peptide 2 (51 aa)
MRIAVAAQARAFDTSVETSPLRLWNAPRASRRASASACSRHRLVGSPFGPS*

>peptide 3 (34 aa)
MNGLTRFPLSLSTIQRNHSQGNGLGRISGERRPC*

>peptide 4 (34 aa)
MPLLLELRSAHAGRSGRKTLSGGEFGWGGTSVKR*

>peptide 5 (33 aa)
MRIDRPRRSNCSLEKRPQRRTGPKFPGRGGQRG*

>peptide 6 (30 aa)
MRADPGGRHCQVGSLAGAAHLLKDNAGVLR*

>peptide 7 (29 aa)
MEQCRQGKSAKWIRNLGKRIGSEDWARGS*

>peptide 8 (35 aa)
VKRGYPLSLSISISGGKETNKDSPSNGERTGKSPA*

>peptide 9 (40 aa)
MNRKSSYGAQLRANLEPTKGVGRLRQQDGGHGSRNPLRSV*

>peptide 10 (55 aa)
MPRHLISDAHEWINEIPTVPVYYPAKPQPRERAWQNQRGKKTLLSLTLVRLCEMT*

>peptide 11 (93 aa)
MCLGRMWNGESRSADRLEAWTDADCSGGPSPGLRYVRGNVATAIVECTTRLTACFGICVLQASASGLPIRPVLKHGPRSLTCVRVNGWQTRKA*

Sequence

>CNT30531232
AGGTCAAGCGGGGCTACCCGCTGAGTTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAAGAG
CCCAGCATGAGAATCGATCGCCCTCGGCGTTCGAATTGTAGTCTGGAGAAGCGTCCTCAGCGACGGACCGGGCCCAAGTTCCCTGGAAGGGGGGGCCAGA
GAGGGTGAGAGCCCCGTCGTGTCCGGACCCTGTCGCACCACGAGGCACTGTCGGCGAGTCTGGTTGTTTGGGAATGCAGCCCTAATCGGGCGGTAAATTC
CGTCCAAGGCTAAATATGGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATT
GTCGGGAGGGAAGCGGATGGGGGCCGGCGATGTGCCTCGGTCGGATGTGGAACGGTGAGAGCCGGTCCGCCGATCGACTCGAGGCATGGACCGATGCGGA
TTGCAGTGGCGGCCCAAGCCCGGGCCTTCGATACGTCCGTGGAAACGTCGCCACTGCGATTGTGGAATGCACCACGCGCCTCACGGCGTGCTTCGGCATC
TGCGTGCTCCAGGCATCGGCTAGTGGGCTCCCCATTCGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAATGGGTGGCAAACCC
GTAAGGCGTAAGGAAGCTGATTGGTGGGATCCCTTTTGGGTGCACCGCCGACCGACCTTGATCTTCTGAGAAGGGTTCGAGTGAGAGCATGCCTGTCGGG
ACCCGAAAGATGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGATACTGACGTGCAAATCGTTCGTCTGACTTG
GGTATAGGGGCGAAAGACTAATCGAACCGTCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCTCAAGAACGAGTTCTATCGGGTAAA
GCCAATGATTAGAGGCATCGGGGGCGCAACGCCCTCGACCTATTCTCAAACTTTAAATAGGTAGGACGGCGCGGCTGCTTCGTTGAGCCACGCCACGGAA
TCGAGAGCTCCAAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGGAAGTCGAGTTACGGTGCCCAACTGCGCGCTAACCTAGAACC
CACAAAGGGTGTTGGTCGATTAAGACAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACTAGCCC
CGAAAATGGATGGCGCTGAAGCGCGCGACCTATACTCGGCCGTCAAGGCAAGTGCCAGGCCTTGATGAGTAGGAGGGCGCGGCGGTCGCTGCAAAACCTG
GGGCGTGAGCCCGGGCGGAGCGGCCGTCGGTGCAGATCTTGGTGGTAGTAGCAAATATTCAAATGAGAACTTTGAAGACCGAAGAGGGGAAAGGTTCCAT
GTGAACGGCACTTGTACATGGGTTAGTCGATCCTAAGAGACGGGGGAAGCCCGTCTGATAGCGCCTCGTGCGCGAGCTTCGAAAGGGAATCGGGTTAAAA
TTCCTGAACCGGGACGTGGCGGTTGACGGCAACGTTAGGGAGTCCGGAGACGTCGGCGGGGGCCTCGGGAAGAGTTATCTTTTCTGTTTAACAGCCTGCC
CACCCTGGAAACGGCTCAGCCGGAGGTAGGGTCCAGCGGCTGGAAGAGCACCGCACGTCGCGTGGTGTCCGGTGCGCCCCCGGCGGCCCTTGAAAATCTG
GAGGACCGAGTGCCGTCCACGCCCGGTCGTACTCATAACCGCATCAGGTCTCCAAGGTGAACAGCCTCTGGTCGATGGAACAATGTAGGCAAGGGAAGTC
GGCAAAATGGATCCGTAACCTCGGGAAAAGGATTGGCTCTGAGGACTGGGCACGGGGGTCCTAATCCCGAACCCGTCGGCTGTCGGTGGACTGCTCGAGC
TGCTCTCGCGGCGAGAGCGGGTCGCCGCGTGCCGGCCGGGGGACGGATTAGGAACGGCTCCTTCGGGGGCCTTCCTCGGGCGTCGAACAGTCAACTCAGA
ACTGGTACGGACAAGGGGAATCCGACTGTTTAATTAAAACAAAGCATTGCGATGGTCCCTGCGGATGCTCACGCAATGTGATTTCTGCCCAGTGCTCTGA
ATGTCAAATGAAGAAATTCAACCAAGCGCGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGC
ATGAATGGATTAACGAGATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCAGAATCAGCGGGGAAAGAAGACCCT
GTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGGAGCCGGAAACGGCGAAAGTGAAATACCACTACTTTTAACGT
TATTTTACTTATTCCGTGAAACGGAGGCGGGGCAATGCCCCTTCTTTTAGAACTAAGGTCCGCGCATGCGGGCCGATCCGGGCGGAAGACATTGTCAGGT
GGGGAGTTTGGCTGGGGCGGCACATCTGTTAAAAGATAACGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTAGAACAAAAGGGTAAA
AGCTCGTTTGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCCTATCGATCCTTTAGATCTTCGGAATTTGAAGCTAGAGGTGTCAGAAAA
GTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGCGACGTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAAT
TCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGATGATAGTGTCACA
ATAGTAATTCAACCTAGTACGAGAGGAACCGTTGATTCGCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAGCTACCGTGCGCTGGATT
ATGACTGAACGCCTCTAAGTCAGAATCCGGGCTAGAAGTGACGCATAAGCTCGCCGCTCGATTGCCGACCTGCAGTAGGGGACTTGTTCCCCCAAGGGCA
CGTGTCGTTGGTGAAGCTCTCGCGGTGGATGAACCGCGTGGGCCGCCTTGAAGCACAATTCCTATTGAGCGATGAGTAGAATCTTTTGCAGACGACTTAA
ATACGCGACGGGGTATTGTAAGTGGCAGAGTGGCCTTGCTGCCACGATCCACTGAGATTCAGCCCTTGTCGCTTCGATTCGTCCCTC