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Detailed information on CNT3053061


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3073023Amborella trichopodaQuercus suber6.824.3486.1565reverse complement

Expression of CNT3053061

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MNKLQKDENRFLCGLKHFTYIDLQKLFLYELKNRSFLKQLNYRIKPIKM*

>peptide 2 (60 aa)
MKKIEDLTLHNRSRTGSLLHNRSFLHSKTSSLPKNHTKTKNQKPEAGKLSNITKPNKTRMR

>peptide 3 (31 aa)
MPRLSWPQQSSPHTHADLGTYYTCCLHTIKT*

Sequence

>CNT3053061
TTTATAAAGACGAAAGCACAAGGATAGTCAATTCATTGGGCAAGCATCCGTAGATATACATGGTAGATAAGTAGCAGGCTTAAAGCAAGACACACACAGA
GTCCTATGTACAGTAGTCATAGGAAAGCACACAGCAAAAGCAGAGGAAGCATGACTGCCATGATCAACTGAACTGCCTTATTTCACTCTAGCAAAGCACC
TATTTTATCTTCAAAGACACAACACATCCCAACCCTAACATATATTCTTTTTCATAGTAATGGGTTGAAAGGGTTTTCTTTCTCCTCTCATTTGCAGATG
CCTCGACTATCCTGGCCTCAACAGTCCTCTCCCCATACACATGCAGATCTGGGTACATATTACACCTGTTGTCTCCATACCATCAAAACGTAATTATTAA
AAAAAAAAACTATCAATTAGGAACAAGAAAAACCCTAAAATGCATCATTAACTATAAAAAAGAACACAAAACACAATTTCGGATCGAATCCCCAACTCAT
CCTAAAATAATTCCTCAAAAAAAGGAAATAATAATAATAATACAGAGATTTTTTGCTATTTTGTGGACTGGAACAACAGTTTTTTATGTCACTAAATGAA
TAAGTTACAGAAAGATGAAAACCGATTTCTTTGCGGACTAAAACATTTTACATATATAGATTTACAGAAGCTTTTCTTATATGAATTGAAGAACCGATCA
TTTCTCAAACAATTAAATTACAGAATTAAACCCATCAAAATGTGAAAATCAAAACATTAAAAGAGAAAAACAAATGAAAAAGATAGAAGATCTTACCCTC
CACAACCGGAGCCGCACTGGCAGCCTGCTCCACAACCGCAGTTTCCTCCACAGCAAGACATCTTCTCTCCCTAAAAATCACACAAAAACCAAAAACCAAA
AACCGGAAGCAGGAAAACTCTCAAATATCACAAAACCAAACAAAACGAGAATGAGA