Detailed information on CNT30530261


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692619Eucalyptus grandisOryza sativa70.8878.3990.81185forward
CNT30316771Eucalyptus grandisCorylus avellana76.6343.6789.5200forward
CNT30517065Eucalyptus grandisJuglans regia76.2568.6286.93199forward
CNT30221766Eucalyptus grandisHordeum vulgare37.5535.6488.7898forward
CNT30131974Eucalyptus grandisLolium perenne68.9759.0285180forward
CNT30343741Eucalyptus grandisEragrostis tef70.8875.8290.27185forward
CNT30479822Eucalyptus grandisArabidopsis halleri59.3937.5381.94155forward
CNT30329110Eucalyptus grandisAsparagus officinalis72.4137.1386.77189forward
CNT30120938Eucalyptus grandisCitrus clementina26.0531.9288.2468forward
CNT30576009Eucalyptus grandisOryza barthii22.223.0189.6658reverse complement
CNT30558432Eucalyptus grandisPanicum hallii59.7753.6189.74156forward
CNT30333597Eucalyptus grandisCynara cardunculus27.5916.4884.7272forward

Expression of CNT30530261

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSEVSRKVTPEPTAWWMRAIMSGSGLGGP*

>peptide 2 (34 aa)
MPMQPSPCADTSSPCDPSLILLTVVVDAAAIAVV*

>peptide 3 (86 aa)
LSEEDFVGVRTVDVGGVEEGDAGADGVVDEGDHVGLGLGRAVEGGHAHAAQPLRRHLQPLRPQFDPPHRCRRRRRHCRRLARARSIP

Sequence

>CNT30530261
CTTTCCGAGGAGGATTTCGTTGGTGTGAGGACCGTAGATGTCGGAGGTGTCGAGGAAGGTGACGCCGGAGCCGACGGCGTGGTGGATGAGGGCGATCATG
TCGGGCTCGGGCTTGGGAGGGCCGTAGAAGGCGGACATGCCCATGCAGCCCAGCCCCTGCGCCGACACCTCCAGCCCCTGCGACCCCAGTTTGATCCTCC
TCACCGTTGTCGTCGACGCCGCCGCCATTGCCGTCGTCTAGCTCGAGCTCGCTCGATCCCT