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Detailed information on CNT30530180


BLAST search results

BLAST vs Swiss-Prot:
sp|P62981|RS27A_SOLTU, E-value = 9e-77

BLAST vs NONCODE:
NONPOPT001132, E-value = 6e-43

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674447Eucalyptus grandisSetaria viridis32.6425.8393.6172forward
CNT30316655Eucalyptus grandisCorylus avellana33.7856.5193.82178forward
CNT30728895Eucalyptus grandisCorchorus capsularis33.424.2892.05176forward
CNT30628786Eucalyptus grandisVigna unguiculata31.6934.0894.61167forward
CNT30220676Eucalyptus grandisHordeum vulgare33.7831.6296.07178forward
CNT3067544Eucalyptus grandisLeersia perrieri33.7810.8295.51178forward
CNT30720110Eucalyptus grandisTriticum spelta33.7828.1696.63178forward
CNT30368046Eucalyptus grandisSorghum bicolor33.7829.1896.07178forward

Expression of CNT30530180

Peptides detected in this lncRNA

>peptide 1 (74 aa)
MLDLLGLGVGLLLTLLGAAPEAEDEVEGGLLLDVVVGEGAAVLELLAGEDEALLVGRDALLVLDLGLDVVDGVGG

Sequence

>CNT30530180
CCACACTTGAATCCCACAATCATCATCCGAAAGCAACATAAACTAAACCCAGTAAAAAGATTACCGCTACAGACTCCATAATTTAAATTATCTATCTCTC
TATCGATCTCAATCACCGCCGGCCTTCTGGTAAACATAGGTGAGGCCGCACTTACCGCAGTAGTGGCGGTCGAAGTGGTTGGCCATGAAGGTGCCGGCGC
CGCACTCGCCGTTGGGGCACTCCTTCCGGAGCCGCTGGACCTTGCCGGAGTCGTCCACCTTGTAGAACTGGAGGACGGCGAGCTTGACCTTCTTCTTCTT
ATGCTTGATCTTCTTGGGCTTGGTGTAGGTCTTCTTCTTACGCTTCTTGGCGCCGCCCCGGAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATG
TTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCT
TGACGTTGTCGATGGTGTCGGAGGACT