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Detailed information on CNT30530127


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONMTRT000104, E-value = 3e-71

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692810Eucalyptus grandisOryza sativa68.9717.4190.45220forward
CNT30378684Eucalyptus grandisArabidopsis thaliana67.7121.2693.52216forward
CNT30300827Eucalyptus grandisTriticum aestivum68.9719.3590220forward
CNT3089382Eucalyptus grandisVigna radiata63.6444.5291.13203forward
CNT30540534Eucalyptus grandisBrassica napus67.7118.8292.59216forward
CNT30145113Eucalyptus grandisMedicago truncatula67.7165.8593.52216forward
CNT30441777Eucalyptus grandisAegilops tauschii68.9739.0889.55220forward
CNT3059907Eucalyptus grandisArabidopsis lyrata50.7831.8391.36162forward
CNT3018289Eucalyptus grandisZea mays68.978.4891.36220forward
CNT30606924Eucalyptus grandisGossypium raimondii58.6222.8692.51187forward
CNT3067789Eucalyptus grandisLeersia perrieri42.9551.1289.78137forward
CNT30655381Eucalyptus grandisRosa chinensis32.2919.2591.26103forward
CNT30627896Eucalyptus grandisDaucus carota67.7114.7295.37216forward
CNT30683192Eucalyptus grandisTriticum urartu68.9721.7290220forward
CNT30484609Eucalyptus grandisChara braunii33.5427.2383.18107forward
CNT3058324Eucalyptus grandisAmborella trichopoda60.8228.1290.21194forward
CNT30149760Eucalyptus grandisBrachypodium distachyon67.0849.6588.79214forward
CNT30117690Eucalyptus grandisOryza nivara44.243.9392.2141forward
CNT3049694Eucalyptus grandisCucumis sativus22.2623.9192.9671forward

Expression of CNT30530127

Peptides detected in this lncRNA

>peptide 1 (37 aa)
FPYWVKMQTYSYRSRNNGTRDNIVFFLVKRDNIVFIK*

Sequence

>CNT30530127
ACTTCCCATATTGGGTAAAAATGCAAACCTATAGCTACAGAAGTAGGAATAATGGCACCCGAGATAATATTGTTTTTTTTTTGGTTAAGAGAGATAATAT
TGTTTTCATAAAGTAGAGATCTAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAATGAAGGCAATAATAAATACAGAAGTTGTGGTCAA
TAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCGGTGCTGGTTATCCAGTTACAGAAGCGACCCCATAGGTTTTCGCTTTCG
CGTCTCAATACATATACAG