Detailed information on CNT30530066


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONBRAT004126, E-value = 2e-52

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30703171Eucalyptus grandisQuercus lobata34.621.893.49215reverse complement
CNT30220823Eucalyptus grandisHordeum vulgare34.626.892.56215reverse complement
CNT3085220Eucalyptus grandisVigna radiata32.2116.8292.5200reverse complement
CNT30314046Eucalyptus grandisCamelina sativa34.625.6193.49215reverse complement
CNT3082978Eucalyptus grandisBrassica juncea34.622.6593.02215reverse complement
CNT30142437Eucalyptus grandisLolium perenne34.6211.3590.23215reverse complement
CNT30574574Eucalyptus grandisVitis vinifera29.315.4189.01182reverse complement

Expression of CNT30530066

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MSSPALDIADLSSTHSRVRPVFFGSQRKCISSTPIGRYERINVRSSRTND*

>peptide 2 (53 aa)
MRGLMSDPQGQMIDLPIQNNLREGLSLTEYIISCYGARKGVVDTAVRTLDAGYL

Sequence

>CNT30530066
ATAGCTCAGTTGATAGAGCATTGGGCTTTTAACCTAATGGTCGCAGGTTCAAGTCCCACTATACCCAAACCTACCTTACTATAGTAGGTGATGTGTAGTA
GCTTTCAAAGATCACTCTTTGGCCTTTAGACTCGCTTCAGCGACTTTGCCCTTTAAGTGACAAAGGGGGTGATCTATCTTAACGATTATTGTGATCTATC
TTAACGATTATTCAGAAAGGGAAGTAAGCTTTGGCATCATCAGCCACTTGCTCGACCACCAATGTCTTACACTGCATTGCCAACGGCTTTAGCCTCTTGT
ACTTAAAAGGACTACAGCTCATACAACTGCCCTACTTACTCATTTGCATGTCGTCTCCGGCTCTTGACATTGCAGATCTATCTTCAACTCACTCTCGAGT
GAGACCTGTCTTTTTCGGGAGCCAGAGGAAATGCATCTCAAGTACACCAATTGGTAGGTATGAGAGGATTAATGTCAGATCCTCAAGGACAAATGATTGA
TTTACCTATTCAAAACAATTTACGCGAAGGACTATCTTTAACAGAATATATCATTTCTTGCTACGGAGCCCGCAAAGGAGTTGTGGATACTGCTGTACGA
ACATTAGATGCTGGATATCTT