« Back to Eucalyptus grandis search


Detailed information on CNT30530009


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SLN8|DBR_TOBAC, E-value = 4e-71

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30702461Eucalyptus grandisQuercus lobata34.220.6382.44131forward
CNT30377811Eucalyptus grandisArabidopsis thaliana32.930.9681.75126forward
CNT30186563Eucalyptus grandisSecale cereale34.9919.4881.34134forward
CNT30128700Eucalyptus grandisCorymbia citriodora91.6488.8692.59351forward
CNT3026596Eucalyptus grandisPopulus trichocarpa38.1235.182.19146forward
CNT30118125Eucalyptus grandisCitrus clementina31.599.0686.78121forward

Expression of CNT30530009

Peptides detected in this lncRNA

>peptide 1 (90 aa)
ADSFVRNHHHLFPDIAAVEQPDESCWSILETFGSVFHIHNLPLFDLRQYHLQELRVEMIVIEHQETFHSNPLQDKVHQVVYTFGLLEIVL*

Sequence

>CNT30530009
GCCGACTCATTCGTGAGAAACCACCACCACTTGTTTCCCGACATTGCGGCCGTAGAACAGCCCGATGAGAGCTGTTGGAGCATTCTCGAGACCTTCGGCA
GTGTCTTCCACATACACAATCTTCCCCTCTTTGATCTGAGGCAATACCATCTCCAGGAACTTCGGGTAGAGATGATAGTAATCGAACACCAAGAAACCTT
CCATTCTAATCCGCTTCAGGACAAGGTTCATCAAGTTGTGTACACCTTCGGGCTGCTCGAGATTGTACTGTGAGATCATTCCACATACCGCGATTCGGCC
ATGAAGTTTCATGTTGAGCAGCACCGCATCGAGCATCTTTCCACCAACATTTTCAAAGTAGATATCGATACCCTCAGGTAAGC