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Detailed information on CNT30529934


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670787Eucalyptus grandisSetaria viridis33.8137.0185.11141forward
CNT30639580Eucalyptus grandisNymphaea colorata35.0132.1684.93146forward
CNT30517189Eucalyptus grandisJuglans regia24.9426.7485.58104forward
CNT30375086Eucalyptus grandisArabidopsis thaliana34.0519.881.69142forward
CNT30619260Eucalyptus grandisSesamum indicum34.2913.4387.41143forward
CNT3020599Eucalyptus grandisCitrullus lanatus34.0512.3483.8142forward
CNT3072357Eucalyptus grandisQuercus suber34.2913.9288.11143forward
CNT30544223Eucalyptus grandisBrassica napus33.3331.7482.01139forward
CNT3076639Eucalyptus grandisBrassica juncea33.3321.7581.29139forward
CNT30601056Eucalyptus grandisFraxinus excelsior34.2926.4382.52143forward
CNT30607325Eucalyptus grandisGossypium raimondii34.0511.0185.21142forward
CNT30680065Eucalyptus grandisTriticum urartu29.2632.1983.61122forward
CNT3026673Eucalyptus grandisPopulus trichocarpa34.0515.0385.21142forward
CNT30151326Eucalyptus grandisBrachypodium distachyon32.8533.7484.67137forward
CNT30104292Eucalyptus grandisOryza rufipogon30.722.1882.03128forward
CNT30723196Eucalyptus grandisLupinus angustifolius34.0517.8284.51142forward

Expression of CNT30529934

Peptides detected in this lncRNA

>peptide 1 (37 aa)
IKRSQPFSFRKNGKTCAARLNCSTNNMLFYRPCKLYS*

Sequence

>CNT30529934
AATAAAAAGAAGTCAGCCTTTCAGCTTTAGGAAAAATGGCAAAACATGTGCAGCAAGGTTGAATTGCAGCACTAACAACATGCTATTCTACAGGCCTTGC
AAACTTTATTCATAGACCCTCTCATAGTCTCATCGATTTATCAGCTCACCTTCCTCGCCCCGAAAAACATCCAACCATACTTCCCGAATAACAAAAATCC
CACCATTCTACCGAGAAATCAAATTGAGAAAGAAATGGGGAAGCCGTCCGTAAAATCTTCATGTGAACCCGCCTAGTACCTGTAGTGAGGAGGCTTGTAG
GGACCCTCGACGGGGACGCTAATGTAGTCGGCTTGCTCCTTGCTGAGCTTGGTGAGCTTAGCACCGAGCTTGCCGAGGTGAAGAGCAGCCACCTTCTCAT
CCAGGTGCTTGGGCAAG