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Detailed information on CNT30529029


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30618959Eucalyptus grandisSesamum indicum43.6514.285.01894forward
CNT3020650Eucalyptus grandisCitrullus lanatus34.6740.886.48710forward
CNT30730408Eucalyptus grandisCorchorus capsularis14.7563.8591.39302forward
CNT30632355Eucalyptus grandisVigna unguiculata21.2450.1288.05435forward
CNT30201085Eucalyptus grandisPisum sativum20.2620.5489.16415forward
CNT3047566Eucalyptus grandisPrunus dulcis43.3145.9886.36887forward
CNT3094383Eucalyptus grandisSolanum tuberosum10.510086.05215reverse complement
CNT30194121Eucalyptus grandisSecale cereale16.1636.9888.82331forward
CNT30588787Eucalyptus grandisMusa acuminata17.5856.4383.06360reverse complement
CNT30510815Eucalyptus grandisSolanum lycopersicum12.1652.289.96249forward
CNT30171250Eucalyptus grandisTrifolium pratense4.9327.6792.08101forward
CNT30245953Eucalyptus grandisAvena sativa4.3533.4687.6489reverse complement
CNT30446760Eucalyptus grandisSaccharum spontaneum12.1622.0591.16249forward
CNT30606803Eucalyptus grandisGossypium raimondii4.5933.2294.6894forward
CNT30217417Eucalyptus grandisKalanchoe fedtschenkoi10.8447.4491.44222forward
CNT30655383Eucalyptus grandisRosa chinensis21.0912.0690.97432forward
CNT30214788Eucalyptus grandisHelianthus annuus13.4886.5286.96276forward
CNT30627898Eucalyptus grandisDaucus carota30.7620.4787.46630forward
CNT30595988Eucalyptus grandisOryza meridionalis16.532.3490.24338forward
CNT30430934Eucalyptus grandisPapaver somniferum42.6813.3884.1874forward
CNT3022800Eucalyptus grandisPopulus trichocarpa10.8465.2991.44222forward
CNT30332506Eucalyptus grandisDioscorea rotundata15.1934.1486.17311forward
CNT30103542Eucalyptus grandisOryza rufipogon11.5733.4390.72237forward
CNT30116375Eucalyptus grandisOryza nivara4.324.3186.3688reverse complement
CNT30604206Eucalyptus grandisOryza punctata9.5749.2587.76196forward
CNT30558183Eucalyptus grandisPanicum hallii2.8822.7889.8359reverse complement

Expression of CNT30529029

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MPPMGTNGLGLTPPYITRRCNLSLNTRIDN*

>peptide 2 (45 aa)
MVTSTISLSPMPLKFQEFVTSTVFDGYTGIQNTNEMDVCWLNHSS*

>peptide 3 (42 aa)
MGFILVPKNNIPKLSYVLRYLCGQGLCYRVYSFDHRDQFLVA*

>peptide 4 (39 aa)
MYISSYFDFYEVPFFATADKNRFLDNAYVESLFFSSNFF*

>peptide 5 (34 aa)
MVIRVSKIQTRWMFVGSTILLSSGLDKEGVQLLT*

Sequence

>CNT30529029
GATCCCTTTTATTTGACTGCTAAAGCTAACAAACAATGCAATATAAAAAAAATAGAATTTGAAAATAATAAATAAAAAAAGAGTGCTCTTATTCAAAACG
TCTCATGATCTTCAACCAATTCTGCGCTTCAATATAATTACCAGGAGTAAGCGTTATAGCTTGTTTCCAATACCCAGCGGCTTGATCGAACCAAGCCTCC
GCAATTTCAGAATCCCCCTGTCGAATGGCCTGTTCTCCCCGATCGGAATAGGTGGGTCAATTCCTTCCCTTAGAACCGTACTTGACAGTTTCCTACCTCA
TACGGCTCATTGTTCAATTCTTGTGGTGTCCCATTTTTTTTTCTCAGGTTAACCAAAAGCAAAAGAGGTTAATTCCATGAGTTTCAAACTTGAATTTTTA
TTAATAATAAAAAAGAATCCGTTTTTTTTCTTTTTTTAGTTTTATCTTTTCTCCCATCTTCAGAAGAATAAAGCTTAGGCATTTCCACTATTGCTAGAAT
TTTCTCAAAGGTTACTATCTCGGTTTCATAGAGAAATTGATATAGAATCTTCGAAAAAGTCTTTTCTTCATAATAAAGAAAAGACTTGTTATATTTGGGA
TTTGATGCTACATCGCTGCTCAATACCTTAGGGGATCGACTTTATAGCATAAATGGATTCCTAACATTTATCTTCTATCATGACATAAGTAAGTAAGCAG
TTCTTATTGTATCGGCCCAAAACCTCACTAATTGATCTTTACAGTGCTTTCTCTATCAATTAGATCCTTTATCCATAGAGTAAAGTATCTAGGCATGTAT
ATTTCTTCATATTTTGACTTTTATGAAGTTCCTTTCTTTGCTACAGCTGATAAAAATCGTTTTTTGGACAATGCATATGTAGAAAGCCTATTTTTTTCTA
GTAATTTTTTCTAGTATTTACTAGTGGATTCACTCTTTTCTCTTTCCTTTTTTCTTTCTATAGTGGAGATAGTCGCACGTAATGACAGATCACAGCCATA
TTATTTAAAGCTTGTGGTAAAAATGGGTTTCATTCTAGTGCCCAAAAATAATATTCCAAAGCTTTCATATGTTCTCCGTTACTTGTGTGGACAAGGCCTA
TGTTATAGAGTATATAGCTTCGATCATAGGGATCAATTTCTAGTCGCATAGCTTCATAATAATTCTATAAAGCTTCCGCATAATTTCCTTCAGATTGAGC
CAACATCCGTTATGGTCGTTGTTCAATTCAAAGAATCTCTGTTCCAGAACCATACGTGAGATTTTCACCTCATACAGCTCCTCCCTTATGTGCATAATGA
GAATAATACATGGGATCAAAAAAGATTGAAATATTCTCATTATTGACTCAGCGTGGCTAGTGTTTTTACAAGAAATCTCTAGCTAACCTTCCTGCAAAGA
TCTTTTTTACCATCAAATGGGTTGAGACTGGATAAAAAAAATGGTAACTTCAACAATTTCTTTGTCCCCCATGCCCCTTAAATTCCAGGAATTCGTCACT
TCAACAGTCTTTGATGGTTATACGGGTATCCAAAATACAAACGAGATGGATGTTTGTTGGCTCAACCATTCTTCTTAGTTCCGGTCTCGATAAGGAAGGA
GTACAATTGTTAACATAACAAAGTTTTCGTGTTGTTGATTTCTAGACGTAGTGCTTCTTCTCATATGCCGCCTATGGGTACTAATGGATTAGGGTTGACT
CCACCATACATAACCCGTAGGTGTAACCTTTCGCTCAATACTAGAATCGACAATTGAAGATATGAGGCTGCATTAATCGGGGATACACGAAAGAAGGAAT
TGTTCTTTTTTACAAATTTCACCTTCAAAAAGTGTAGATTTTTTGCAAGAACCTTTTTTTCTTTCTATCCCGAATCACATGTCTTTCTTCTAAGACTGAA
AGAAAAGCGGTAAATAAAATAGAAAAAGATACTTTAAAAAAAAAAAGAATAATCAAATCACACCATCTCTGTAATAGGTAAATGCCTCTTTTTCTCCTGA
AGTTGTCGGAATTATTCGTAATAAGATATTGGTTACAATTGAAAATGT