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Detailed information on CNT30528740


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 6e-112

BLAST vs NONCODE:
NONMEST001181, E-value = 1e-97

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30364163Eucalyptus grandisSorghum bicolor79.1772.8887.14669forward
CNT30359105Eucalyptus grandisLactuca sativa79.6445.7587.96673forward
CNT30120658Eucalyptus grandisCitrus clementina79.6466.987.37673forward
CNT30583334Eucalyptus grandisEchinochloa crusgalli79.1731.1287.44669forward

Expression of CNT30528740

Peptides detected in this lncRNA

>peptide 1 (29 aa)
GLKNHFIQLKLRIDSQAPDDREPIGPDFT*

>peptide 2 (40 aa)
MVSELSTSRVMVLPVRVLTKICMPPLSLSTRWRVDSFWML*

>peptide 3 (53 aa)
MPSLSWILAFTLSMVSELSTSRVMVLPVRVLTKICMPPLSLSTRWRVDSFWML*

Sequence

>CNT30528740
TAGGATTAAAAAACCATTTTATTCAATTGAAACTAAGGATTGATTCACAAGCCCCAGACGATCGGGAACCCATCGGCCCCGATTTTACATAAACACTTTC
AAAGAAATTCATTCATAACAACCCTCGTCCATAGACACCAACTTTCAAGCAGACACAACCACTTAGAATCCACCACGAAGACGGAGCACGAGGTGAAGGG
TCGACTCCTTCTGTATGTTGTAATCCGCCAGGGTGCGGCCGTCCTCCAACTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTT
GTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCCACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGCCT
CCCCTGAGCCTCAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAGCC
TCTGCTGGTCCGGGGGAATTCCTTCCTTGTCCTGGATCTTGGGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCCACCTCCAGGGTGATGGTCTTGCCGG
TGAGGGTCTTGACGAAGATCTGCATGCCTCCCCTGAGCCTGAGCACAAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCAGCCAAGGTACGGCCGTC
CTCGAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGCGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGCTC
TCCACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTAACGAAG