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Detailed information on CNT30528694


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 2e-113

BLAST vs NONCODE:
NONMEST001181, E-value = 5e-107

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315749Eucalyptus grandisCorylus avellana62.8942.6789.75693forward
CNT30513431Eucalyptus grandisJuglans regia62.8971.1588.89693forward
CNT30729068Eucalyptus grandisCorchorus capsularis62.2554.7986.3686forward
CNT30710308Eucalyptus grandisGlycine max62.5274.5787.08689forward
CNT30169907Eucalyptus grandisPistacia vera62.0750.2287.57684forward
CNT30562217Eucalyptus grandisActinidia chinensis63.1669.1286.35696forward
CNT30586586Eucalyptus grandisMusa acuminata62.3448.3188.21687forward
CNT30242438Eucalyptus grandisAvena sativa62.5274.0989.99689forward
CNT30669573Eucalyptus grandisTriticum dicoccoides62.5270.2388.68689forward
CNT30311059Eucalyptus grandisCamelina sativa63.1655.1186.49696forward
CNT3077671Eucalyptus grandisBrassica juncea63.2571.6386.23697forward
CNT30229076Eucalyptus grandisAnanas comosus61.3452.3689.5676forward
CNT30217467Eucalyptus grandisKalanchoe fedtschenkoi62.1679.7486.42685forward
CNT30153569Eucalyptus grandisPrunus persica62.2576.0586.88686forward
CNT3032244Eucalyptus grandisTheobroma cacao60.0757.6287.16662forward
CNT30149632Eucalyptus grandisBrachypodium distachyon59.7168.6188.15658forward
CNT30603673Eucalyptus grandisOryza punctata62.2569.3688.05686forward
CNT3066524Eucalyptus grandisSelaginella moellendorffii52.7291.588.81581forward

Expression of CNT30528694

Peptides detected in this lncRNA

>peptide 1 (87 aa)
MVSELSTSRVMVLPVRVLTKICICRAPKKITNLSLPFNHRNPEIKKTPRTRNPENPRSKIKTDTEKERNPIRRSRRTDRSEIGKPLP*

>peptide 2 (35 aa)
SNAQSIGLKNHFIQLKLRIDSQAPDDREPIGPDFT*

>peptide 3 (53 aa)
MPSLSWILAFTLSMVSELSTSRVMVLPVRVLTKICMPPLSLSTRWRVDSFWML*

>peptide 4 (40 aa)
MVSELSTSRVMVLPVRVLTKICIPPRRRRTRWRVDSFWML*

Sequence

>CNT30528694
AGTAATGCACAGAGTATAGGATTAAAAAACCATTTTATTCAATTGAAACTAAGGATTGATTCACAAGCCCCAGACGATCGGGAACCCATCGGCCCCGATT
TTACATAAACACTTTCAAAGAAATTCATTCATAACAACCCTCGTCCATAGACACCAACTTTCAAGCAGACACAACCACTTAGAATCCACCACGAAGACGG
AGCACGAGGTGAAGGGTCGACTCCTTCTGTATGTTGTAATCCGCCAGGGTGCGGCCGTCCTCCAACTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCG
GGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCCACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC
GAAGATCTGCATGCCTCCCCTGAGCCTCAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTCGAGCTGCTTT
CCAGCGAAGATCAGCCTCTGCTGGTCCGGGGGAATTCCTTCCTTGTCCTGGATCTTGGGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCCACCTCCAGG
GTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATACCTCCACGAAGACGGAGGACAAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCAG
CCAAGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGCGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTC
GATGGTGTCAGAGCTCTCCACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTAACGAAGATCTGCATCTGTAGAGCACCAAAAAAGATCACAAATTTA
AGCCTCCCCTTCAACCATCGCAACCCAGAAATCAAGAAAACGCCAAGAACACGAAACCCAGAGAACCCAAGATCGAAGATCAAAACGGATACGGAAAAAG
AAAGAAACCCAATTCGCAGATCGCGAAGAACGGACAGATCGGAGATCGGGAAGCCCTTACCTTGAAAGAATTCGCAAGGGGCTTGGCTGAGACTCAATCG
AG