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Detailed information on CNT3052765


BLAST search results

BLAST vs Swiss-Prot:
sp|Q943L2|H2B11_ORYSJ, E-value = 8e-49

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693619Amborella trichopodaOryza sativa25.7920.787.79131forward
CNT30674589Amborella trichopodaSetaria viridis28.1561.6487.41143forward
CNT30523103Amborella trichopodaSetaria italica28.1521.1587.41143forward
CNT30315505Amborella trichopodaCorylus avellana31.334.7986.16159forward
CNT30518188Amborella trichopodaJuglans regia31.117.9390.51158forward
CNT30702570Amborella trichopodaQuercus lobata49.0249.883.53249forward
CNT30618876Amborella trichopodaSesamum indicum28.158.7986.71143forward
CNT3072234Amborella trichopodaQuercus suber23.0318.5784.62117forward
CNT30379403Amborella trichopodaManihot esculenta32.4829.3684.24165forward
CNT30526697Amborella trichopodaPhaseolus vulgaris27.1752.4785.51138forward
CNT30632073Amborella trichopodaVigna unguiculata31.121.0186.08158forward
CNT30194796Amborella trichopodaPisum sativum28.7420.0385.62146forward
CNT30163372Amborella trichopodaPistacia vera22.8320.1487.07116forward
CNT3094085Amborella trichopodaSolanum tuberosum30.5130.6984.52155forward
CNT30180643Amborella trichopodaSecale cereale28.3517.4188.19144forward
CNT30292924Amborella trichopodaTriticum aestivum29.3327.6489.26149forward
CNT30220711Amborella trichopodaHordeum vulgare26.1812.8488.72133forward
CNT30383318Amborella trichopodaTriticum turgidum23.4312.9588.24119forward
CNT30565715Amborella trichopodaActinidia chinensis31.6920.5188.2161forward
CNT30586986Amborella trichopodaMusa acuminata24.4135.0382.26124forward
CNT3086649Amborella trichopodaVigna radiata22.2415.1590.27113forward
CNT30553165Amborella trichopodaOryza glaberrima25.7928.4889.31131forward
CNT30171046Amborella trichopodaTrifolium pratense31.144.5187.34158forward
CNT30443203Amborella trichopodaAegilops tauschii29.3322.7187.25149forward
CNT30244799Amborella trichopodaAvena sativa28.1519.9288.81143forward
CNT30660053Amborella trichopodaTriticum dicoccoides29.3322.4787.25149forward
CNT30457159Amborella trichopodaSaccharum spontaneum23.4314.2789.08119forward
CNT30130711Amborella trichopodaLolium perenne25.3918.9787.6129forward
CNT303693Amborella trichopodaZea mays25.9838.2687.12132forward
CNT30606042Amborella trichopodaGossypium raimondii31.151.887.97158forward
CNT30231835Amborella trichopodaAnanas comosus51.184083.85260forward
CNT30205622Amborella trichopodaHelianthus annuus22.8342.9682.76116forward
CNT30129800Amborella trichopodaCorymbia citriodora31.692090.06161forward
CNT30684130Amborella trichopodaTriticum urartu25.9818.2187.88132forward
CNT30722585Amborella trichopodaTriticum spelta28.1519.5186.71143forward
CNT30346527Amborella trichopodaEragrostis tef21.6552.1388.18110forward
CNT30363575Amborella trichopodaSorghum bicolor23.4312.9187.39119forward
CNT30619778Amborella trichopodaCajanus cajan54.5341.8482.31277forward
CNT30596761Amborella trichopodaOryza meridionalis25.7916.5885.5131forward
CNT30359864Amborella trichopodaLactuca sativa25.5931.484.62130forward
CNT30369169Amborella trichopodaOryza glumipatula25.7922.8690.08131forward
CNT30431330Amborella trichopodaPapaver somniferum22.2411.5284.07113forward
CNT30570929Amborella trichopodaVitis vinifera31.523.8588.75160forward
CNT3024557Amborella trichopodaPopulus trichocarpa30.5129.9281.29155forward
CNT30319826Amborella trichopodaAsparagus officinalis44.0938.183.93224forward
CNT30101075Amborella trichopodaOryza rufipogon27.7620.1189.36141forward
CNT30574682Amborella trichopodaOryza barthii25.7919.1587.02131forward
CNT30496069Amborella trichopodaDigitaria exilis26.1816.6787.22133forward
CNT30176425Amborella trichopodaVigna angularis31.318.9786.79159forward
CNT30557628Amborella trichopodaPanicum hallii23.4321.3687.39119forward
CNT30724509Amborella trichopodaLupinus angustifolius30.5128.783.23155forward
CNT3065708Amborella trichopodaSelaginella moellendorffii25.236.8983.59128forward
CNT30114697Amborella trichopodaEutrema salsugineum30.9125.6186.62157forward

Expression of CNT3052765

Peptides detected in this lncRNA

>peptide 1 (44 aa)
LIQFSIKSISTCFHKQNSKSTHHHFSTFKAPLPYTKSAEINKKL*

>peptide 2 (39 aa)
SFNFQLRAFQHVFTNKIQNPPTIISPPSRHHFHIQKVLK*

Sequence

>CNT3052765
TCTCATTCAATTTTCAATTAAGAGCATTTCAACATGTTTTCACAAACAAAATTCAAAATCCACCCACCATCATTTCTCCACCTTCAAGGCACCACTTCCA
TATACAAAAAGTGCTGAAATAAACAAAAAACTATAATAAAAAAAAAATAGAAACCCGAACCCTAAATCCCTAATTGCAAAGCGCTACCCCTAATTCACGA
GCTGGTGAACTTGGTAACAGCCTTTGTACCCTCAGAGACAGCGTGCTTAGCAAGCTCACCAGGAAGGACCAAACGCACTGAGGTCTGGATCTCCCTCGAG
GCCTCCTGTGCGAGCTTCTCAAAGATATCATTGATGAAGCTATTCATGATCCCCATGGCCTTGGAGGAGATGCCGATATCAGGGTGGACCTGCTTCAAGA
CCTTGAAGATGTAGATCTTGTAGGTCTCGATGCTCTTCTTGGACCTCTTCTTCTTCTTATCAGAAGCTCCCCCCTCCTTTGAAGGAAGGCGCTTCTCAGC
CTTGGGCT