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Detailed information on CNT30526413


BLAST search results

BLAST vs Swiss-Prot:
sp|Q08298|RD22_ARATH, E-value = 5e-62

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30500761Phaseolus vulgarisCoffea canephora12.6829.0886.7398forward
CNT30381137Phaseolus vulgarisManihot esculenta12.5525.7388.6697forward
CNT30631441Phaseolus vulgarisVigna unguiculata22.3842.5187.28173forward
CNT3084947Phaseolus vulgarisVigna radiata36.6128.9192.23283forward
CNT3034142Phaseolus vulgarisTheobroma cacao10.8721.2788.184forward

Expression of CNT30526413

Peptides detected in this lncRNA

>peptide 1 (52 aa)
HRKPLKVSKQTRENYTYEENYIVQYMHQVADATGTSYSDLVDDKGTWMQIYF*

>peptide 2 (41 aa)
MENLVKTSSTLSDENGIESATWRGKKSATLVSSCNWVAVAA*

>peptide 3 (49 aa)
MKMVLNPQLGVARRVPLWCHRVIGSRWQRSGNQMAILVQLKHAPVFSCGL

>peptide 4 (39 aa)
MILRKEMADRNSSWLNVEHLKGQMFRVPLRCVGVAQSKF*

Sequence

>CNT30526413
CATAGGAAGCCACTTAAAGTATCTAAACAAACAAGAGAAAATTATACGTATGAAGAGAACTACATAGTACAATACATGCATCAAGTAGCTGATGCTACTG
GAACTAGTTATTCTGATCTGGTAGATGATAAAGGAACTTGGATGCAAATCTACTTTTGAACCCAAACAACATGATCCTGAGGAAGGAAATGGCAGATAGG
AACAGTTCCTGGCTTAACGTTGAGCACTTGAAAGGCCAAATGTTTAGGGTTCCATTGCGATGTGTCGGTGTGGCACAGAGTAAGTTCTAGTGCTCTCAGT
TTTGTGGCAGTAAAAAACAGCATAAGGGTAATTCTGCTTGTGGCATACAACAGCCGTGTCCCCTGATATCTTCTTCACTCCCGGTGCCACCGTGTATTTC
TGCAACCCCATTTCTTTGTCAACTTCTGTGGACAAAACCTCAACGTTCTTTCCAAGCTTGGAAGTGCTGAAATCAACCATGGACTCAAGTGAAGTGGCGC
AGTACTTTTCCTCACCCTTGATACCAGTCTCTTCACATTCACTAAGAGTGTTCTCTATGATATGAGCTTCCTCTGAGCCTGGTTTGATGGAAAACTTGGT
GAAGACATCGTCCACCTTGTCGGATGAAAATGGTATTGAATCCGCAACTTGGCGTGGCAAGAAGAGTGCCACTTTGGTGTCATCGTGTAATTGGGTCGCG
GTGGCAGCGTAGCGGTAATCAAATGGCGATTTTGGTCCAACTGAAACATGCACCGGTTTTTTCTTGTGGCCTG