« Back to Phaseolus vulgaris search


Detailed information on CNT30526003


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3BAI2|YCX91_PHAAO, E-value = 1e-13

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30226590Phaseolus vulgarisHordeum vulgare12.3659.3199.17121forward
CNT30662247Phaseolus vulgarisTriticum dicoccoides12.8736.7393.65126forward
CNT30646904Phaseolus vulgarisRosa chinensis14.450.7294.33141forward
CNT30683778Phaseolus vulgarisTriticum urartu13.9943.4994.89137forward
CNT3058692Phaseolus vulgarisAmborella trichopoda13.6934.7291.04134forward
CNT30581628Phaseolus vulgarisEchinochloa crusgalli11.9534.2199.15117forward
CNT30604623Phaseolus vulgarisOryza punctata13.0761.5492.97128forward

Expression of CNT30526003

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MLEIVLIRHRISWAGHTFFSLAHFSLSFT*

Sequence

>CNT30526003
TCAAACGAAGCAGACTTCCCGGTCACTAATCACGATCAGTCATTTTGACTCTCACTGCTAAAAATTCGAGCAAAACGCTGTGGATACACTTTTTAATGCT
TTCACCGAAAGTGTCAAAAAACTTACGGTAACACATCATTTTCCCTGCCGGAAAACTGGACATATTCCAATATAGTCGAGCAGGTAATTCATCGCCTTAG
TAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGGACGGATTCCTCCTTTTGCTCCTCAGCCTACGGGGTATTAGCAACCGTTTCC
AGCTGTTGTTCCCCTCCCAAGGGTAGGTTCTTACGCGCCTTCTCACGCATTTTACAAATCTTCGACTACCCTACAGTTAACAACAAGGAGAAAGGCAAAG
GCTTTGATTCCTGAACTCAGGTAGCTCAAGCAGAAGCAAGAAAGAAGAAAGTAAGGCGCACTCAATCAAAGCTGCCTTTAACAAAAACAAACTGAAAACC
TAGATTCTTGCTAAATAGTTCCTTTTTCTTATCTCTTTATGCTCGAAATCGTACTCATTCGACATCGAATTTCATGGGCTGGGCATACCTTCTTTAGCTT
AGCTCATTTTTCTCTTTCTTTTACTTAGATAGAGGAAGATCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAAGGGGGTCGCAGTGACCAGGCCCG
GGCGACTGTTTACCAAAAACATAGGTCTCCGCAAAGTCGTAAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAAGGAAGTTGGGCAGG
GTCAGTTAAATCGTCTGCAGGTACATAAACTGCTTGAATAGAAGTTATGGACCCTTCTTTGGTAGAAGTGATTCTTTCTTGTAAAGAACCCATTTCAGTA
CTAAGAGTGGGTTGATAACCCACAGCAGAGGGCATTCGACCCAATAAAGCAGATACTTTAGATCCTGCTTGTACGAAGG