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Detailed information on CNT3052558


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522232Amborella trichopodaSetaria italica35.6814.7484.35147forward
CNT30701275Amborella trichopodaQuercus lobata33.9824.2682.14140forward
CNT30710762Amborella trichopodaGlycine max27.4333.2483.19113forward
CNT30164816Amborella trichopodaPistacia vera31.3163.2482.17129forward
CNT30592165Amborella trichopodaMusa acuminata15.2922.4288.8963forward
CNT30172855Amborella trichopodaTrifolium pratense40.7820.4480.95168forward
CNT30610520Amborella trichopodaGossypium raimondii33.9816.8182.14140forward
CNT30362130Amborella trichopodaSorghum bicolor35.6844.2885.71147forward
CNT3038429Amborella trichopodaCucumis melo26.734.781.82110forward
CNT30113199Amborella trichopodaFicus carica43.6941.2881.67180forward
CNT30334407Amborella trichopodaCynara cardunculus34.2219.6482.98141forward
CNT30726195Amborella trichopodaLupinus angustifolius40.7828.2480.95168forward

Expression of CNT3052558

Peptides detected in this lncRNA

>peptide 1 (34 aa)
VLPEEAGGGDAARVEGIEGDACFLMVATVELLHR*

>peptide 2 (33 aa)
MYIPFTCDGADNYEAFRRVVRFLHVFEKDAGEEE

Sequence

>CNT3052558
GTGCTCCCTGAAGAGGCCGGTGGTGGCGATGCAGCCAGGGTAGAGGGAATTGAAGGTGATGCCTGTTTCCTCATGGTAGCGACGGTGGAACTCCTGCATC
GTTAGCATGTTGCACACCTTGCTGTCTTTATAAGCTTTGGCACCGTCAAAGTCTCCACCATCAATCATAGGCGAGGTGTTAGTGCCATTCAGACCCGCAG
ATAGTCCCCGCAGGTGTTGGTGTTACCTGGGTTAGGGTTTTTTGGAAGCATGTGAGTGCTCTCGGTTACTTTTAGAGCAAGTTCTGAGAAAGAGTGTATA
TATATATATATGTATATTCCTTTTACCTGTGATGGAGCCGACAATTATGAGGCGTTTCGCAGGGTAGTCAGATTTCTGCATGTCTTCGAGAAGGATGCGG
GAGAGGAGGAAG