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Detailed information on CNT30525342


BLAST search results

BLAST vs Swiss-Prot:
sp|P00865|RBS1_SOYBN, E-value = 2e-57

BLAST vs NONCODE:
NONMEST000023, E-value = 4e-21

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30402284Phaseolus vulgarisBeta vulgaris8.1537.989.1683forward
CNT30629679Phaseolus vulgarisVigna unguiculata34.9465.0888.2356forward
CNT30196843Phaseolus vulgarisPisum sativum19.6342.0284200forward
CNT30146172Phaseolus vulgarisMedicago truncatula17.4726.7784.27178forward
CNT30623620Phaseolus vulgarisDaucus carota11.9722.2285.25122forward
CNT30356625Phaseolus vulgarisLactuca sativa7.3621.8786.6775forward
CNT3030395Phaseolus vulgarisTheobroma cacao5.89249060forward
CNT30176025Phaseolus vulgarisVigna angularis18.5529.5391.53189forward

Expression of CNT30525342

Peptides detected in this lncRNA

>peptide 1 (93 aa)
MLREVISLNKFPYAEGLGSRFRMRIIWATKKQNEMGNFGDLVAWWLVGNETDALHLTNVVKSNDTDETIGMSSLSLVKLLQHLRRISAPKHRQ*

>peptide 2 (36 aa)
MSSLSLVKLLQHLRRISAPKHRQLPHRPVPSIIVSR*

>peptide 3 (53 aa)
MLSTHINIKHKHQHHSFIHSFIHKLTIITLSIQFNKFTSNSNSKHGTHPFRRR*

Sequence

>CNT30525342
TAGGAACAAAAAATCAGCAGATAATTCATTAATTTCTCATCCTTTCATATCTGATAACAGAAACCAAAAGTACAGAATGTGAATATCAGAAAGCAAATGG
TAATTGGTTCCATCCCAGATACATATATATATATAAATATATATAAAACATATGTTGAGAGAGGTCATCTCATTAAATAAATTTCCTTACGCAGAAGGAT
TAGGCTCTAGGTTTCGGATGAGGATAATCTGGGCAACAAAAAAGCAAAATGAAATGGGAAATTTTGGAGACTTAGTAGCCTGGTGGCTTGTAGGCAATGA
AACTGATGCACTGCACTTGACGAACGTTGTCAAATCCAATGATACGGATGAAACCATCGGGATGAGCAGTCTGAGCCTCGTAAAGCTCCTTCAACACCTG
AGAAGAATCAGTGCACCCAAACATAGGCAATGAAACTGATGCACTGCACTTGACGAACGTTGTCAAATCCAATGATACGGATGAAACCATCGGGATGAGC
AGTCTGAGCCTCGTAAAGCTCCTTCAACACCTGAGAAGAATCAGTGCACCCAAACATAGGCAGCTTCCACATCGTCCAGTACCTTCCATCATAGTATCCA
GGTGACTTGTTGTGTTCACGGTACACGAAACCATGCTATCAACACACATCAACATCAAACACAAACATCAACATCATTCATTCATTCATTCATTCATTCA
TAAATTAACCATAATAACCCTTTCAATTCAATTCAACAAATTCACCTCCAATTCGAATTCCAAGCACGGAACCCATCCTTTCCGAAGAAGGTAGTCTACT
TCCTTTGCCAATTGTTCTTTTGTCAGGGGTGGCAGTAATATCATTGTTCATCTTCCTGCTTGGGAACCCTCCCAGGGACTTCAGCCCAGTGAAAGGAGCC
ACCATACCGGCACCGGCACCGGCACGGTTAACGGTCGTCACAGCGGGGGAGGAGATCATTGAAGAAGCCATTTCCTTCTTCTTCTTCTTACTTCTGAATC
ACTTGCTGTTCTGCTGCTA