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Detailed information on CNT30524952


BLAST search results

BLAST vs Swiss-Prot:
sp|P23569|CHSY_PUEML, E-value = 8e-112

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30195395Phaseolus vulgarisPisum sativum58.8554.385.22379forward
CNT30171495Phaseolus vulgarisTrifolium pratense76.2459.8185.13491forward
CNT30606850Phaseolus vulgarisGossypium raimondii22.6716.7683.56146forward
CNT30573473Phaseolus vulgarisVitis vinifera24.0730.4581.29155forward

Expression of CNT30524952

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MVSPGPNPNKTPHSSPSPVVLSPFSTDFLLISSKMNSTHALDMFP*

>peptide 2 (28 aa)
MVCAVQTNSNKGFSICGIGSEPTITAAAP

Sequence

>CNT30524952
ATCCCATCTTAAATATTAAAATTTAGAAATACAATTATTAATTTGATAAAAGAAGGTTAAAAATAAAATCGGGTAGGGGCCAAATAGCCTTAATGGCGAA
TAGGGTAGGGCATGGTGTGAGTGTTATACTGCGACACTGTGGAGAACAACGGTCTCAATGGTAAGTCCAGGTCCAAACCCAAACAAAACACCCCATTCAA
GTCCTTCACCTGTCGTTTTAAGTCCATTTTCAACTGATTTCCTCCTCATCTCATCCAAGATGAATAGCACACATGCACTTGACATGTTCCCATAATTGCT
AAGCACATCTCTAGTGGCCTTCATCTTTTCAGGTTTCAAACCCAACTTTTGCTCAACTTGGTCCAGAATTGCAGGTCCACCAGGGTGTGCAATCCAGAAG
ATGGAGTTGTAATCAGAGATGTTCAATGGGTTGAAGGCCTCAAAAAGTGCCTTCTCAATGTTCTTTGAGACAATCCCAGGAACATCCTTAAGGAGGTGAA
ACGTGAGTCCAACTTCACGAAGGTGGCCATCAATAGCACCATCACTGTCTGGAGCAATGGTCTGTGCAGTCCAAACCAACTCAAACAAAGGCTTCTCAAT
CTGTGGAATTGGGTCAGAACCAACAATCACTGCAGCTGCTCCAT